RNA–Protein interactions for RNA: ENST00000559152.5

CLPX-204, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 1 (best)

Gene CLPX, Length 2,228 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-204ENST00000559152 RNPC3Q96LT9 517 aaKnown RBP12.12□□□□□ -0.47
CLPX-204ENST00000559152 AP1M1Q9BXS5 423 aa12.12□□□□□ -0.47
CLPX-204ENST00000559152 C2orf40Q9H1Z8 148 aa12.12□□□□□ -0.47
CLPX-204ENST00000559152 NFU1Q9UMS0 254 aa12.12□□□□□ -0.47
CLPX-204ENST00000559152 CCDC66A2RUB6 948 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 LGR5O75473 907 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 POTEJP0CG39 1038 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 TBXAS1P24557 533 aaPredicted RBP12.11□□□□□ -0.47
CLPX-204ENST00000559152 PIK3CAP42336 1068 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 NLRP11P59045 1033 aaKnown RBP12.11□□□□□ -0.47
CLPX-204ENST00000559152 MRPS25P82663 173 aaKnown RBP12.11□□□□□ -0.47
CLPX-204ENST00000559152 PPFIA1Q13136 1202 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 BIRC3Q13489 604 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 SURF1Q15526 300 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 CASKIN2Q8WXE0 1202 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 GLG1Q92896 1179 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 TATDN2Q93075 761 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 MMP19Q99542 508 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 CGRRF1Q99675 332 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 PLVAPQ9BX97 442 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 MRPL4Q9BYD3 311 aaKnown RBP12.11□□□□□ -0.47
CLPX-204ENST00000559152 RAB17Q9H0T7 212 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 UTP11Q9Y3A2 253 aaKnown RBP12.11□□□□□ -0.47
CLPX-204ENST00000559152 PAPPA2Q9BXP8 1791 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 CLDN3O15551 220 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 HLA-DRAP01903 254 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 ACOT2P49753 483 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 CAPSQ13938 189 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 PTPROQ16827 1216 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 CLEC16AQ2KHT3 1053 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 CELF3Q5SZQ8 465 aaKnown RBP12.11□□□□□ -0.47
CLPX-204ENST00000559152 TRIM72Q6ZMU5 477 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 ZBTB8OSQ8IWT0 167 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 SHCBP1Q8NEM2 672 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 ZNF564Q8TBZ8 553 aaPredicted RBP12.11□□□□□ -0.47
CLPX-204ENST00000559152 DDX1Q92499 740 aaKnown RBP12.11□□□□□ -0.47
CLPX-204ENST00000559152 ZNF516Q92618 1163 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 ZNF653Q96CK0 615 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 LRRC45Q96CN5 670 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 L3MBTL3Q96JM7 780 aaPredicted RBP12.11□□□□□ -0.47
CLPX-204ENST00000559152 HINFPQ9BQA5 517 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 ZMYND15Q9H091 742 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 FAM114A2Q9NRY5 505 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.11□□□□□ -0.47
CLPX-204ENST00000559152 RBPJLQ9UBG7 517 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 LCTP09848 1927 aa12.11□□□□□ -0.47
CLPX-204ENST00000559152 WDR81Q562E7 1941 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 ADGRA2Q96PE1 1338 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 DNAJC25-GNG10A0A024R161 153 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 AGPSO00116 658 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 PTENP60484 403 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 LY6KQ17RY6 165 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 CFAP58Q5T655 872 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 CRELD2Q6UXH1 353 aaPredicted RBP12.1□□□□□ -0.47
CLPX-204ENST00000559152 ATP8B4Q8TF62 1192 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 PRPF31Q8WWY3 499 aaKnown RBP12.1□□□□□ -0.47
CLPX-204ENST00000559152 CLMNQ96JQ2 1002 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 RUNDC3BQ96NL0 473 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 GPR20Q99678 358 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 SH3GL2Q99962 352 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 ZSWIM1Q9BR11 485 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 NUP85Q9BW27 656 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 TARS2Q9BW92 718 aaKnown RBP12.1□□□□□ -0.47
CLPX-204ENST00000559152 IMPG2Q9BZV3 1241 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 FAM204AQ9H8W3 233 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 ANKFY1Q9P2R3 1169 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 PNMA3Q9UL41 463 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 PTPRFP10586 1907 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 UNCXA6NJT0 531 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 ASB14A6NK59 587 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 BHMG1C9JSJ3 638 aaPredicted RBP12.1□□□□□ -0.47
CLPX-204ENST00000559152 PHACTR2O75167 634 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 TOM1L1O75674 476 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 DHX34Q14147 1143 aaKnown RBP12.1□□□□□ -0.47
CLPX-204ENST00000559152 TFDP1Q14186 410 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 HLTFQ14527 1009 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLPX-204ENST00000559152 SEL1L2Q5TEA6 688 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 TDRD10Q5VZ19 366 aaKnown RBP12.1□□□□□ -0.47
CLPX-204ENST00000559152 DLK2Q6UY11 383 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 DHX37Q8IY37 1157 aaKnown RBP12.1□□□□□ -0.47
CLPX-204ENST00000559152 OPTNQ96CV9 577 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 DDX47Q9H0S4 455 aaKnown RBP12.1□□□□□ -0.47
CLPX-204ENST00000559152 SMARCAD1Q9H4L7 1026 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 AVENQ9NQS1 362 aaPredicted RBP12.1□□□□□ -0.47
CLPX-204ENST00000559152 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.1□□□□□ -0.476e-9■■■■■ 134.6
CLPX-204ENST00000559152 TRPC6Q9Y210 931 aa12.1□□□□□ -0.47
CLPX-204ENST00000559152 MYH9P35579 1960 aaKnown RBP12.09□□□□□ -0.47
CLPX-204ENST00000559152 ESYT3A0FGR9 886 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 FAM187AA6NFU0 413 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 A6NNZ2 444 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 SPOPO43791 374 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 PEX10O60683 326 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 COMTP21964 271 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 CTNNA2P26232 953 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 GBP1P32455 592 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 LMAN1P49257 510 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 CUL2Q13617 745 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 MESDQ14696 234 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 MAPK6Q16659 721 aa12.09□□□□□ -0.47
CLPX-204ENST00000559152 TUBB8Q3ZCM7 444 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms