RNA–Protein interactions for RNA: ENST00000557644.5

NEDD1-213, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 1 (best) BASIC

Gene NEDD1, Length 2,367 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-213ENST00000557644 RBAKQ9NYW8 714 aaPredicted RBP16.63■□□□□ 0.25
NEDD1-213ENST00000557644 COL4A6Q14031 1691 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 TRIOBPQ9H2D6 2365 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 LACTBL1A8MY62 500 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 PTGESO14684 152 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 KIAA0391O15091 583 aaKnown RBP16.62■□□□□ 0.25
NEDD1-213ENST00000557644 FKBP3Q00688 224 aaKnown RBP16.62■□□□□ 0.25
NEDD1-213ENST00000557644 PRPF38BQ5VTL8 546 aaKnown RBP16.62■□□□□ 0.25
NEDD1-213ENST00000557644 TMEM130Q8N3G9 435 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 CSGALNACT2Q8N6G5 542 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 TOPORSQ9NS56 1045 aaPredicted RBP16.62■□□□□ 0.25
NEDD1-213ENST00000557644 TTC26A0AVF1 554 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 LCHNA4D1U4 455 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 ZNF233A6NK53 670 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 TLL1O43897 1013 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 RPL13P26373 211 aaKnown RBP16.62■□□□□ 0.25
NEDD1-213ENST00000557644 ERCC5P28715 1186 aaPredicted RBP16.62■□□□□ 0.25
NEDD1-213ENST00000557644 HTRA4P83105 476 aaPredicted RBP16.62■□□□□ 0.25
NEDD1-213ENST00000557644 MYBPC2Q14324 1141 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 KYAT1Q16773 422 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 ZC3H3Q8IXZ2 948 aaKnown RBP16.62■□□□□ 0.25
NEDD1-213ENST00000557644 FAM84AQ96KN4 292 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 UBN1Q9NPG3 1134 aa16.62■□□□□ 0.25
NEDD1-213ENST00000557644 PBX2P40425 430 aa16.61■□□□□ 0.25
NEDD1-213ENST00000557644 NOMO2Q5JPE7 1267 aa16.61■□□□□ 0.25
NEDD1-213ENST00000557644 BRSK2Q8IWQ3 736 aa16.61■□□□□ 0.25
NEDD1-213ENST00000557644 RAD9AQ99638 391 aa16.61■□□□□ 0.25
NEDD1-213ENST00000557644 SRRTQ9BXP5 876 aaKnown RBP16.61■□□□□ 0.25
NEDD1-213ENST00000557644 TMEM117Q9H0C3 514 aa16.61■□□□□ 0.25
NEDD1-213ENST00000557644 PDE11AQ9HCR9 933 aa16.61■□□□□ 0.25
NEDD1-213ENST00000557644 RNF216Q9NWF9 866 aaPredicted RBP16.61■□□□□ 0.25
NEDD1-213ENST00000557644 FRMD4BQ9Y2L6 1034 aa16.61■□□□□ 0.25
NEDD1-213ENST00000557644 SMIM28A0A1B0GU29 152 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 CETN3O15182 167 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 HOXA2O43364 376 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 XKR4Q5GH76 650 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 PLEKHO2Q8TD55 490 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 RPS6KC1Q96S38 1066 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 KIAA1586Q9HCI6 787 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 TBC1D13Q9NVG8 400 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 CNTN3Q9P232 1028 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 INSL6Q9Y581 213 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 SZT2Q5T011 3432 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 B4GALT3O60512 393 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 PPP2R3AQ06190 1150 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 CYP24A1Q07973 514 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 ZNF280BQ86YH2 543 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 CCDC127Q96BQ5 260 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 CACNG4Q9UBN1 327 aa16.6■□□□□ 0.25
NEDD1-213ENST00000557644 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.59■□□□□ 0.25
NEDD1-213ENST00000557644 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.59■□□□□ 0.25
NEDD1-213ENST00000557644 INPPL1O15357 1258 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 ARHGEF15O94989 841 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 NFICP08651 508 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 BTG3Q14201 252 aaPredicted RBP16.59■□□□□ 0.25
NEDD1-213ENST00000557644 HSP90AA4PQ58FG1 418 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 LMBRD2Q68DH5 695 aaPredicted RBP16.59■□□□□ 0.25
NEDD1-213ENST00000557644 JADE1Q6IE81 842 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 FOXR2Q6PJQ5 311 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 FAM186BQ8IYM0 893 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 POP1Q99575 1024 aaKnown RBP16.59■□□□□ 0.25
NEDD1-213ENST00000557644 PBX4Q9BYU1 374 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 PLEKHA5Q9HAU0 1116 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 PSMC2P35998 433 aaKnown RBP16.59■□□□□ 0.25
NEDD1-213ENST00000557644 CT47A1Q5JQC4 288 aaPredicted RBP16.59■□□□□ 0.25
NEDD1-213ENST00000557644 EFCAB13Q8IY85 973 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 URGCPQ8TCY9 931 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 C18orf25Q96B23 403 aaPredicted RBP16.59■□□□□ 0.25
NEDD1-213ENST00000557644 KIF12Q96FN5 646 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 MFSD14AQ96MC6 490 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 YBX2Q9Y2T7 364 aaKnown RBP16.59■□□□□ 0.25
NEDD1-213ENST00000557644 PTPRJQ12913 1337 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 TRIP11Q15643 1979 aa16.59■□□□□ 0.25
NEDD1-213ENST00000557644 FNDC1Q4ZHG4 1894 aaPredicted RBP16.58■□□□□ 0.25
NEDD1-213ENST00000557644 DDHD2O94830 711 aa16.58■□□□□ 0.25
NEDD1-213ENST00000557644 DLATP10515 647 aaKnown RBP16.58■□□□□ 0.25
NEDD1-213ENST00000557644 DLG4P78352 724 aa16.58■□□□□ 0.25
NEDD1-213ENST00000557644 RNASELQ05823 741 aaKnown RBP16.58■□□□□ 0.25
NEDD1-213ENST00000557644 NAB2Q15742 525 aa16.58■□□□□ 0.25
NEDD1-213ENST00000557644 SPRED2Q7Z698 418 aa16.58■□□□□ 0.25
NEDD1-213ENST00000557644 BORCS6Q96GS4 357 aa16.58■□□□□ 0.25
NEDD1-213ENST00000557644 CEP63Q96MT8 703 aa16.58■□□□□ 0.25
NEDD1-213ENST00000557644 PPP1R10Q96QC0 940 aaKnown RBP16.58■□□□□ 0.25
NEDD1-213ENST00000557644 GOLGA2P5Q9HBQ8 144 aa16.58■□□□□ 0.25
NEDD1-213ENST00000557644 NFE2L3Q9Y4A8 694 aa16.58■□□□□ 0.25
NEDD1-213ENST00000557644 MRPL42Q9Y6G3 142 aaKnown RBP16.58■□□□□ 0.25
NEDD1-213ENST00000557644 CITO14578 2027 aa16.58■□□□□ 0.25
NEDD1-213ENST00000557644 THP07101 528 aa16.58■□□□□ 0.24
NEDD1-213ENST00000557644 CA3P07451 260 aa16.58■□□□□ 0.24
NEDD1-213ENST00000557644 KCNE1P15382 129 aa16.58■□□□□ 0.24
NEDD1-213ENST00000557644 ZNF165P49910 485 aa16.58■□□□□ 0.24
NEDD1-213ENST00000557644 GUCY2FP51841 1108 aa16.58■□□□□ 0.24
NEDD1-213ENST00000557644 SOX4Q06945 474 aaPredicted RBP16.58■□□□□ 0.24
NEDD1-213ENST00000557644 TPD52L1Q16890 204 aaPredicted RBP16.58■□□□□ 0.24
NEDD1-213ENST00000557644 IRF2BP1Q8IU81 584 aa16.58■□□□□ 0.24
NEDD1-213ENST00000557644 CMTR2Q8IYT2 770 aaKnown RBP16.58■□□□□ 0.24
NEDD1-213ENST00000557644 AOPEPQ8N6M6 819 aa16.58■□□□□ 0.24
NEDD1-213ENST00000557644 ENOX1Q8TC92 643 aaKnown RBP16.58■□□□□ 0.24
NEDD1-213ENST00000557644 RABGGTAQ92696 567 aa16.58■□□□□ 0.24
NEDD1-213ENST00000557644 SAMSN1Q9NSI8 373 aaKnown RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms