RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TSG101Q99816 390 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 ZBED2Q9BTP6 218 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 TMEM117Q9H0C3 514 aa13.95□□□□□ -0.18
SHMT2-227ENST00000557269 RPF1Q9H9Y2 349 aaKnown RBP13.95□□□□□ -0.18
SHMT2-227ENST00000557269 YBX2Q9Y2T7 364 aaKnown RBP13.95□□□□□ -0.18
SHMT2-227ENST00000557269 SMIM28A0A1B0GU29 152 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 BICDL2A1A5D9 508 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 ZNF233A6NK53 670 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 TULP1O00294 542 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-227ENST00000557269 KIAA0391O15091 583 aaKnown RBP13.94□□□□□ -0.18
SHMT2-227ENST00000557269 TLL1O43897 1013 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 DDHD2O94830 711 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 LDHAP00338 332 aaKnown RBP13.94□□□□□ -0.18
SHMT2-227ENST00000557269 CCDC192P0DO97 292 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 RPL13P26373 211 aaKnown RBP13.94□□□□□ -0.18
SHMT2-227ENST00000557269 ERCC5P28715 1186 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-227ENST00000557269 YARSP54577 528 aaKnown RBP13.94□□□□□ -0.18
SHMT2-227ENST00000557269 FKBP3Q00688 224 aaKnown RBP13.94□□□□□ -0.18
SHMT2-227ENST00000557269 NAB2Q15742 525 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 KYAT1Q16773 422 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 NOMO2Q5JPE7 1267 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 SCARA3Q6AZY7 606 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 ZNF280BQ86YH2 543 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 BRSK2Q8IWQ3 736 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 BORCS6Q96GS4 357 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 MFSD14AQ96MC6 490 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 YME1L1Q96TA2 773 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 RAD9AQ99638 391 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 SRRTQ9BXP5 876 aaKnown RBP13.94□□□□□ -0.18
SHMT2-227ENST00000557269 PDE11AQ9HCR9 933 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 UBN1Q9NPG3 1134 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 TBC1D13Q9NVG8 400 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 RBAKQ9NYW8 714 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-227ENST00000557269 CNTN3Q9P232 1028 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 CACNG4Q9UBN1 327 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 DACH1Q9UI36 760 aa13.94□□□□□ -0.18
SHMT2-227ENST00000557269 PTPRJQ12913 1337 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 FNDC1Q4ZHG4 1894 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 CETN3O15182 167 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 HOXA2O43364 376 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 NFICP08651 508 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 LINC00271P0C7V0 271 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 DLG4P78352 724 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 SOX4Q06945 474 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 CYP24A1Q07973 514 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 JADE1Q6IE81 842 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 FOXR2Q6PJQ5 311 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 SPRED2Q7Z698 418 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 IRF2BP1Q8IU81 584 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 EFCAB13Q8IY85 973 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 ABI1Q8IZP0 508 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 CSGALNACT2Q8N6G5 542 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 SP7Q8TDD2 431 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 C18orf25Q96B23 403 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 CCDC127Q96BQ5 260 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 PPP1R10Q96QC0 940 aaKnown RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 POP1Q99575 1024 aaKnown RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 PBX4Q9BYU1 374 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 PLEKHA5Q9HAU0 1116 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 KIAA1586Q9HCI6 787 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 TOPORSQ9NS56 1045 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 RNF216Q9NWF9 866 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 INSL6Q9Y581 213 aa13.93□□□□□ -0.18
SHMT2-227ENST00000557269 MRPL42Q9Y6G3 142 aaKnown RBP13.93□□□□□ -0.18
SHMT2-227ENST00000557269 RANBP2P49792 3224 aaKnown RBP13.92□□□□□ -0.18
SHMT2-227ENST00000557269 KCNE1P15382 129 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 IGFBP6P24592 240 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-227ENST00000557269 GUCY2FP51841 1108 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 PPP2R3AQ06190 1150 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 BTG3Q14201 252 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-227ENST00000557269 PSMD6Q15008 389 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 ZBTB6Q15916 424 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 CT47A1Q5JQC4 288 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-227ENST00000557269 C1orf220Q5T0J3 134 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 LMBRD2Q68DH5 695 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-227ENST00000557269 FAM186BQ8IYM0 893 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 CMTR2Q8IYT2 770 aaKnown RBP13.92□□□□□ -0.18
SHMT2-227ENST00000557269 ENOX1Q8TC92 643 aaKnown RBP13.92□□□□□ -0.18
SHMT2-227ENST00000557269 RABGGTAQ92696 567 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 RPS6KC1Q96S38 1066 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 CWH43Q9H720 699 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 NRDE2Q9H7Z3 1164 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 DNAJB4Q9UDY4 337 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 TUBGCP4Q9UGJ1 667 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 FRMD4BQ9Y2L6 1034 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 PCDHA11Q9Y5I1 949 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 ANK1P16157 1881 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 GBF1Q92538 1859 aa13.92□□□□□ -0.18
SHMT2-227ENST00000557269 CA3P07451 260 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 PSMC2P35998 433 aaKnown RBP13.91□□□□□ -0.18
SHMT2-227ENST00000557269 PBX3P40426 434 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 POU5F1Q01860 360 aaKnown RBP13.91□□□□□ -0.18
SHMT2-227ENST00000557269 DSC1Q08554 894 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 NCAPHQ15003 741 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 HSP90AA4PQ58FG1 418 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 SPATA1Q5VX52 437 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 FILIP1Q7Z7B0 1213 aa13.91□□□□□ -0.18
SHMT2-227ENST00000557269 DHX40Q8IX18 779 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms