RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 NRLP54845 237 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 PRSS12P56730 875 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 CREMQ03060 361 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 ADCY1Q08828 1119 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 PFKFB3Q16875 520 aaPredicted RBP10.38□□□□□ -0.75
SYNE2-224ENST00000557024 RTP2Q5QGT7 225 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 CREB3L3Q68CJ9 461 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 ANO5Q75V66 913 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 NPAS3Q8IXF0 933 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 TTC13Q8NBP0 860 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 PRPF31Q8WWY3 499 aaKnown RBP10.38□□□□□ -0.75
SYNE2-224ENST00000557024 TMEM143Q96AN5 459 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 TCEANC2Q96MN5 208 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 ZMYND12Q9H0C1 365 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 SH2B1Q9NRF2 756 aaPredicted RBP10.38□□□□□ -0.75
SYNE2-224ENST00000557024 HCFC1R1Q9NWW0 138 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 CACNG4Q9UBN1 327 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 ADAM28Q9UKQ2 775 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 MRPS17Q9Y2R5 130 aaKnown RBP10.38□□□□□ -0.75
SYNE2-224ENST00000557024 SHISA7A6NL88 538 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 EDIL3O43854 480 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 LRP3O75074 770 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 XYLBO75191 536 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 PSMD10O75832 226 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 ERLIN2O94905 339 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 PMLP29590 882 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 HSPA4P34932 840 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 NPEPPSP55786 919 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 LAMTOR4Q0VGL1 99 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 SIM2Q14190 667 aaPredicted RBP10.37□□□□□ -0.75
SYNE2-224ENST00000557024 KRT32Q14532 448 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 NECTIN1Q15223 517 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 CSRP2Q16527 193 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 N4BP2L1Q5TBK1 243 aaPredicted RBP10.37□□□□□ -0.75
SYNE2-224ENST00000557024 SRGAP1Q7Z6B7 1085 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 GPR65Q8IYL9 337 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 CNNM3Q8NE01 707 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 RDM1Q8NG50 284 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 SLC7A14Q8TBB6 771 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 HASPINQ8TF76 798 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 JPH2Q9BR39 696 aaPredicted RBP10.37□□□□□ -0.75
SYNE2-224ENST00000557024 KRTAP3-3Q9BYR6 98 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 KRTAP3-2Q9BYR7 98 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 PLA2G2FQ9BZM2 168 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 CHRDQ9H2X0 955 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 NAP1L2Q9ULW6 460 aaPredicted RBP10.37□□□□□ -0.75
SYNE2-224ENST00000557024 PATJQ8NI35 1801 aa10.37□□□□□ -0.75
SYNE2-224ENST00000557024 KLF18A0A0U1RQI7 1052 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 ADAM12O43184 909 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 TSPAN1O60635 241 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 TADA2AO75478 443 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 ECI2O75521 394 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 PSMA5P28066 241 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 HOXA9P31269 272 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 SRSF5Q13243 272 aaKnown RBP10.36□□□□□ -0.75
SYNE2-224ENST00000557024 PPP2R5DQ14738 602 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 PABPC1LQ4VXU2 614 aaKnown RBP10.36□□□□□ -0.75
SYNE2-224ENST00000557024 IL31Q6EBC2 164 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.36□□□□□ -0.75
SYNE2-224ENST00000557024 CEP57Q86XR8 500 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 ZNF687Q8N1G0 1237 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 RNF149Q8NC42 400 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 CCDC12Q8WUD4 166 aaPredicted RBP10.36□□□□□ -0.75
SYNE2-224ENST00000557024 PSPC1Q8WXF1 523 aaKnown RBP10.36□□□□□ -0.75
SYNE2-224ENST00000557024 SLC7A3Q8WY07 619 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 DDX1Q92499 740 aaKnown RBP10.36□□□□□ -0.75
SYNE2-224ENST00000557024 MCRS1Q96EZ8 462 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 CPB2Q96IY4 423 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 CLSTN3Q9BQT9 956 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 NXF3Q9H4D5 531 aaKnown RBP10.36□□□□□ -0.75
SYNE2-224ENST00000557024 DNMT3BQ9UBC3 853 aaKnown RBP10.36□□□□□ -0.75
SYNE2-224ENST00000557024 MRPS23Q9Y3D9 190 aaKnown RBP10.36□□□□□ -0.75
SYNE2-224ENST00000557024 ZZEF1O43149 2961 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 FAM208BQ5VWN6 2430 aa10.36□□□□□ -0.75
SYNE2-224ENST00000557024 SF3B1O75533 1304 aaKnown RBP eCLIP10.35□□□□□ -0.75
SYNE2-224ENST00000557024 MIA3Q5JRA6 1907 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 CHURC1-FNTBB4DL54 471 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 HRO43593 1189 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 AKAP5P24588 427 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 GNA11P29992 359 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 ADD1P35611 737 aaKnown RBP10.35□□□□□ -0.75
SYNE2-224ENST00000557024 FNTBP49356 437 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 ANAPC15P60006 121 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 PSMC5P62195 406 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 SHC2P98077 582 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 SATB1Q01826 763 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 GRM2Q14416 872 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 HSP90AA2PQ14568 343 aaPredicted RBP10.35□□□□□ -0.75
SYNE2-224ENST00000557024 ACAP1Q15027 740 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 PSMD5Q16401 504 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 AXDND1Q5T1B0 1012 aaPredicted RBP10.35□□□□□ -0.75
SYNE2-224ENST00000557024 FAM171A1Q5VUB5 890 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 TANGO2Q6ICL3 276 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 NOTUMQ6P988 496 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 GSTCDQ8NEC7 633 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 TBC1D32Q96NH3 1257 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 PAAF1Q9BRP4 392 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 TTPALQ9BTX7 342 aa10.35□□□□□ -0.75
SYNE2-224ENST00000557024 TRIM6Q9C030 488 aaPredicted RBP10.35□□□□□ -0.75
SYNE2-224ENST00000557024 CSRNP2Q9H175 543 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms