RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 GOLGA6L19H0YKK7 550 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 ABLIM1O14639 778 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 LDHAP00338 332 aaKnown RBP11.87□□□□□ -0.51
SHMT2-218ENST00000555213 CLTAP09496 248 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 LAG3P18627 525 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 AKAP5P24588 427 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 PBX2P40425 430 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 GATMP50440 423 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 OSTNP61366 133 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 PPP2R3AQ06190 1150 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 ZNF697Q5TEC3 545 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 SLC39A4Q6P5W5 647 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 FOXR2Q6PJQ5 311 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 AGMOQ6ZNB7 445 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 ZBTB45Q96K62 511 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-218ENST00000555213 SAMD11Q96NU1 681 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 CASD1Q96PB1 797 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 FAM193BQ96PV7 902 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-218ENST00000555213 GAD1Q99259 594 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 AGPAT3Q9NRZ7 376 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 TYW1Q9NV66 732 aaKnown RBP11.87□□□□□ -0.51
SHMT2-218ENST00000555213 SNTG2Q9NY99 539 aa11.87□□□□□ -0.51
SHMT2-218ENST00000555213 YBX2Q9Y2T7 364 aaKnown RBP11.87□□□□□ -0.51
SHMT2-218ENST00000555213 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-218ENST00000555213 LCHNA4D1U4 455 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 LINC01553A4QN01 128 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 MEIS3P2A8K0S8 358 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 TISP43B9A030 160 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 ANKRD63C9JTQ0 380 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 PSMA7O14818 248 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 INPPL1O15357 1258 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 CALUO43852 315 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-218ENST00000555213 OFD1O75665 1012 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 MYOGP15173 224 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 FANCCQ00597 558 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 GRIK3Q13003 919 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 HSP90AA4PQ58FG1 418 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 GPR153Q6NV75 609 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 ZC3H3Q8IXZ2 948 aaKnown RBP11.86□□□□□ -0.51
SHMT2-218ENST00000555213 CEP120Q8N960 986 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 NOC3LQ8WTT2 800 aaKnown RBP11.86□□□□□ -0.51
SHMT2-218ENST00000555213 SNX27Q96L92 541 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 ZFP42Q96MM3 310 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 TGS1Q96RS0 853 aaKnown RBP11.86□□□□□ -0.51
SHMT2-218ENST00000555213 TSG101Q99816 390 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 SRRTQ9BXP5 876 aaKnown RBP11.86□□□□□ -0.51
SHMT2-218ENST00000555213 RNF39Q9H2S5 420 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 IKZF4Q9H2S9 585 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 RPF1Q9H9Y2 349 aaKnown RBP11.86□□□□□ -0.51
SHMT2-218ENST00000555213 PLEKHA5Q9HAU0 1116 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 KIAA1586Q9HCI6 787 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 RNF19AQ9NV58 838 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 SLC38A7Q9NVC3 462 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 TBC1D13Q9NVG8 400 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 INTS13Q9NVM9 706 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 KLK14Q9P0G3 267 aa11.86□□□□□ -0.51
SHMT2-218ENST00000555213 MRPL42Q9Y6G3 142 aaKnown RBP11.86□□□□□ -0.51
SHMT2-218ENST00000555213 PDXKO00764 312 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 TGFB1I1O43294 461 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 EXTL3O43909 919 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 POMCP01189 267 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 CXCL8P10145 99 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 RPL13P26373 211 aaKnown RBP11.85□□□□□ -0.51
SHMT2-218ENST00000555213 ADSSP30520 456 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 CTNNB1P35222 781 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 PPM1AP35813 382 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 SCNN1GP51170 649 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 POU5F1Q01860 360 aaKnown RBP11.85□□□□□ -0.51
SHMT2-218ENST00000555213 TAP1Q03518 808 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 NR1I3Q14994 352 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 CD302Q8IX05 232 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 C12orf56Q8IXR9 622 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 GPD1LQ8N335 351 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 SAAL1Q96ER3 474 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 TSPAN18Q96SJ8 248 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 CBWD1Q9BRT8 395 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 FAM213AQ9BRX8 229 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 HSPBP1Q9NZL4 362 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 LIMA1Q9UHB6 759 aaKnown RBP11.85□□□□□ -0.51
SHMT2-218ENST00000555213 PCDHB12Q9Y5F1 795 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 PTPRSQ13332 1948 aa11.85□□□□□ -0.51
SHMT2-218ENST00000555213 SOX1O00570 391 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-218ENST00000555213 XPOTO43592 962 aaKnown RBP11.84□□□□□ -0.51
SHMT2-218ENST00000555213 EXOC3O60645 756 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 ZC3H11AO75152 810 aaKnown RBP eCLIP11.84□□□□□ -0.51
SHMT2-218ENST00000555213 IL18RAPO95256 599 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 THP07101 528 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 ALDH7A1P49419 539 aaKnown RBP11.84□□□□□ -0.51
SHMT2-218ENST00000555213 ACOT2P49753 483 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 CYP2J2P51589 502 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 CCDC173Q0VFZ6 552 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 SEZ6Q53EL9 994 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 LRRC55Q6ZSA7 311 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 XXYLT1Q8NBI6 393 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 CLP1Q92989 425 aaKnown RBP11.84□□□□□ -0.51
SHMT2-218ENST00000555213 MRFAP1L1Q96HT8 127 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 LRCH3Q96II8 777 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 ZNF558Q96NG5 402 aa11.84□□□□□ -0.51
SHMT2-218ENST00000555213 C11orf84Q9BUA3 381 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-218ENST00000555213 PLVAPQ9BX97 442 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms