RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 CPB2Q96IY4 423 aa15.4■□□□□ 0.06
PRPF39-204ENST00000553605 LOXL4Q96JB6 756 aa15.4■□□□□ 0.06
PRPF39-204ENST00000553605 PAAF1Q9BRP4 392 aa15.4■□□□□ 0.06
PRPF39-204ENST00000553605 TRIM6Q9C030 488 aaPredicted RBP15.4■□□□□ 0.06
PRPF39-204ENST00000553605 CACNG4Q9UBN1 327 aa15.4■□□□□ 0.06
PRPF39-204ENST00000553605 LHX6Q9UPM6 363 aa15.4■□□□□ 0.06
PRPF39-204ENST00000553605 GREB1Q4ZG55 1949 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 ZBTB43O43298 467 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 EDIL3O43854 480 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 TSPAN1O60635 241 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 IGHDP01880 384 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 PTPN2P17706 415 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 CCNE1P24864 410 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 GNA11P29992 359 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 GDI1P31150 447 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 OR1D2P34982 312 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 NPEPPSP55786 919 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 FOXC1Q12948 553 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 PTGDRQ13258 359 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 PCBP1Q15365 356 aaKnown RBP eCLIP15.39■□□□□ 0.05
PRPF39-204ENST00000553605 FAM78AQ5JUQ0 283 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 TTC22Q5TAA0 569 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 PDXDC1Q6P996 788 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 EXOC8Q8IYI6 725 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 RNF149Q8NC42 400 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 TMEM121BQ9BXQ6 578 aaPredicted RBP15.39■□□□□ 0.05
PRPF39-204ENST00000553605 NXF3Q9H4D5 531 aaKnown RBP15.39■□□□□ 0.05
PRPF39-204ENST00000553605 AVENQ9NQS1 362 aaPredicted RBP15.39■□□□□ 0.05
PRPF39-204ENST00000553605 KLK14Q9P0G3 267 aa15.39■□□□□ 0.05
PRPF39-204ENST00000553605 ASAP2O43150 1006 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 PSMC3P17980 439 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 SPINK2P20155 84 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 NOVA1P51513 510 aaKnown RBP15.38■□□□□ 0.05
PRPF39-204ENST00000553605 USP11P51784 963 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 PSMC5P62195 406 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 LRRC32Q14392 662 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 B3GNT9Q6UX72 402 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 WDR5BQ86VZ2 330 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 ZNF579Q8NAF0 562 aaKnown RBP15.38■□□□□ 0.05
PRPF39-204ENST00000553605 CCDC12Q8WUD4 166 aaPredicted RBP15.38■□□□□ 0.05
PRPF39-204ENST00000553605 ADAM33Q9BZ11 813 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 DHX33Q9H6R0 707 aaKnown RBP15.38■□□□□ 0.05
PRPF39-204ENST00000553605 BRPF3Q9ULD4 1205 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 WASF3Q9UPY6 502 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 WDFY3Q8IZQ1 3526 aa15.38■□□□□ 0.05
PRPF39-204ENST00000553605 NRG2O14511 850 aaPredicted RBP15.37■□□□□ 0.05
PRPF39-204ENST00000553605 SLC27A2O14975 620 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 EPN2O95208 641 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 KIF4AO95239 1232 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 HOXA6P31267 233 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 TUSC3Q13454 348 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 PLA2G2CQ5R387 149 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 RNF43Q68DV7 783 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 VITQ6UXI7 678 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 FERMT3Q86UX7 667 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 TCP11Q8WWU5 503 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 CEP170P1Q96L14 293 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 ASB16Q96NS5 453 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 RBM12Q9NTZ6 932 aaKnown RBP15.37■□□□□ 0.05
PRPF39-204ENST00000553605 PARP2Q9UGN5 583 aa15.37■□□□□ 0.05
PRPF39-204ENST00000553605 CASTOR2A6NHX0 329 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 GOLGA8AA7E2F4 631 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 GOLGA8BA8MQT2 603 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 GIPC1O14908 333 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 ZNF263O14978 683 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 CDC27P30260 824 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 RFC5P40937 340 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 RAP1GAPP47736 663 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 MLLT6P55198 1093 aaPredicted RBP15.36■□□□□ 0.05
PRPF39-204ENST00000553605 ELAVL2Q12926 359 aaKnown RBP15.36■□□□□ 0.05
PRPF39-204ENST00000553605 PRSS36Q5K4E3 855 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 CACNA2D4Q7Z3S7 1137 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 BICD2Q8TD16 824 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 SMOC1Q9H4F8 434 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 BMP2KQ9NSY1 1161 aaPredicted RBP15.36■□□□□ 0.05
PRPF39-204ENST00000553605 PPME1Q9Y570 386 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 IGF2RP11717 2491 aa15.36■□□□□ 0.05
PRPF39-204ENST00000553605 COL4A2P08572 1712 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 SDK1Q7Z5N4 2213 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 INO80B-WBP1J3KQ70 363 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 ZNF197O14709 1029 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 MICAL2O94851 1124 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 LRG1P02750 347 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 ARF4P18085 180 aaPredicted RBP15.35■□□□□ 0.05
PRPF39-204ENST00000553605 HOXC13P31276 330 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 PTENP60484 403 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 SPIRE1Q08AE8 756 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 ZNF252P-AS1Q0IIN9 211 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 Q4G0T1 1027 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 C1orf228Q6PIY5 440 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 Q6ZS52 159 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 KBTBD6Q86V97 674 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 DEPDC1BQ8WUY9 529 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 GAB3Q8WWW8 586 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 GATA6Q92908 595 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 TCEAL4Q96EI5 215 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 MSANTD3Q96H12 275 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 CORO1BQ9BR76 489 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 C2orf42Q9NWW7 574 aa15.35■□□□□ 0.05
PRPF39-204ENST00000553605 MTRRQ9UBK8 725 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms