RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, human

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCDC88C-206	ENST00000553437	STRN3	Q13033	797 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	STK38	Q15208	465 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	RRAGB	Q5VZM2	374 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FUT10	Q6P4F1	479 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CD300LG	Q6UXG3	332 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	MYCT1	Q8N699	235 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SPRYD3	Q8NCJ5	442 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ZNF396	Q96N95	335 aa	Predicted RBP	11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TCHP	Q9BT92	498 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PANK2	Q9BZ23	570 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PARVG	Q9HBI0	331 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	RXFP1	Q9HBX9	757 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	MRPL17	Q9NRX2	175 aa	Known RBP	11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ADAM28	Q9UKQ2	775 aa		11.26	□□□□□ -0.61
CCDC88C-206	ENST00000553437	MYMK	A6NI61	221 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437		H0YCG3	227 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TADA2A	O75478	443 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	KIF4A	O95239	1232 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	YEATS4	O95619	227 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PIGR	P01833	764 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	KRT18	P05783	430 aa	Known RBP	11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	UROD	P06132	367 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SRGAP2B	P0DMP2	458 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	KCNE1	P15382	129 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SCP2	P22307	547 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	NMT1	P30419	496 aa	Known RBP	11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TXLNA	P40222	546 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	GLUD2	P49448	558 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CLCN4	P51793	760 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	GTF2B	Q00403	316 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	GLRA4	Q5JXX5	417 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	AXDND1	Q5T1B0	1012 aa	Predicted RBP	11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	GPR65	Q8IYL9	337 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	DNAJC19	Q96DA6	116 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	B3GALT6	Q96L58	329 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SNX27	Q96L92	541 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ZMAT2	Q96NC0	199 aa	Known RBP	11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ACAP3	Q96P50	834 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CCDC94	Q9BW85	323 aa	Predicted RBP	11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	APOL5	Q9BWW9	433 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	EMILIN2	Q9BXX0	1053 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ST6GALNAC4	Q9H4F1	302 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	EPHX3	Q9H6B9	360 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TBX20	Q9UMR3	447 aa		11.25	□□□□□ -0.61
CCDC88C-206	ENST00000553437	MUC6	Q6W4X9	2439 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437		K7ENM7	598 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	C2CD2L	O14523	706 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TEX28	O15482	410 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CLDN3	O15551	220 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FAM189A1	O60320	539 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TBCA	O75347	108 aa	Known RBP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	HARS	P12081	509 aa	Known RBP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	KLRC2	P26717	231 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SSTR3	P32745	418 aa	Predicted RBP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	YARS	P54577	528 aa	Known RBP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SOX4	Q06945	474 aa	Predicted RBP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	NOLC1	Q14978	699 aa	Known RBP eCLIP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	E2F4	Q16254	413 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SLC10A6	Q3KNW5	377 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	USP41	Q3LFD5	358 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SEZ6	Q53EL9	994 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	KANK3	Q6NY19	840 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SLC39A4	Q6P5W5	647 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SHC4	Q6S5L8	630 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CCDC73	Q6ZRK6	1079 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SV2B	Q7L1I2	683 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	DYM	Q7RTS9	669 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PPFIBP1	Q86W92	1011 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	C12orf76	Q8N812	135 aa	Predicted RBP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TMEM87A	Q8NBN3	555 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FEZF2	Q8TBJ5	459 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	HASPIN	Q8TF76	798 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	DDX12P	Q92771	950 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	STRA6	Q9BX79	667 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ADAM7	Q9H2U9	754 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ZHX3	Q9H4I2	956 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	GOLGA2P5	Q9HBQ8	144 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TOPORS	Q9NS56	1045 aa	Predicted RBP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CNTN3	Q9P232	1028 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ANKFY1	Q9P2R3	1169 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CDH22	Q9UJ99	828 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	SSX2IP	Q9Y2D8	614 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ZDHHC9	Q9Y397	364 aa		11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TCF20	Q9UGU0	1960 aa	Known RBP	11.24	□□□□□ -0.61
CCDC88C-206	ENST00000553437	FRMD3	A2A2Y4	597 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	LOC730098	B7Z3J9	87 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PI4K2B	G5E9Z4	385 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TMEM189-UBE2V1	I3L0A0	370 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CUTA	O60888	179 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	PPP1R37	O75864	691 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	STAT6	P42226	847 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CLCNKB	P51801	687 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	ITIH3	Q06033	890 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	CBX2	Q14781	532 aa	Predicted RBP	11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	UPP1	Q16831	310 aa		11.23	□□□□□ -0.61
CCDC88C-206	ENST00000553437	TPRN	Q4KMQ1	711 aa		11.23	□□□□□ -0.61

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