RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 ANKFY1Q9P2R3 1169 aa16.77■□□□□ 0.28
SHMT2-204ENST00000553324 PRKAG3Q9UGI9 489 aa16.77■□□□□ 0.28
SHMT2-204ENST00000553324 PCDHA7Q9UN72 937 aa16.77■□□□□ 0.28
SHMT2-204ENST00000553324 PCDHB13Q9Y5F0 798 aa16.77■□□□□ 0.28
SHMT2-204ENST00000553324 SF3B1O75533 1304 aaKnown RBP eCLIP16.76■□□□□ 0.275e-8■■■■■ 37.4
SHMT2-204ENST00000553324 KIAA1671Q9BY89 1806 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 A0A087X0B3 334 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 SMIM28A0A1B0GU29 152 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 TNFRSF10AO00220 468 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 LILRB3O75022 631 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 CLASP2O75122 1294 aaKnown RBP16.76■□□□□ 0.27
SHMT2-204ENST00000553324 TBX10O75333 385 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 EFEMP2O95967 443 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 CLTAP09496 248 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 KCNE1P15382 129 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 OSTNP61366 133 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 ELAVL2Q12926 359 aaKnown RBP16.76■□□□□ 0.27
SHMT2-204ENST00000553324 ALCAMQ13740 583 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 PTPN14Q15678 1187 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 TPRNQ4KMQ1 711 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 HERC4Q5GLZ8 1057 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-204ENST00000553324 FUT10Q6P4F1 479 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 DCLRE1AQ6PJP8 1040 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 MAP4K3Q8IVH8 894 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 CCDC65Q8IXS2 484 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 RNF168Q8IYW5 571 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-204ENST00000553324 PPP1R10Q96QC0 940 aaKnown RBP16.76■□□□□ 0.27
SHMT2-204ENST00000553324 TSPAN18Q96SJ8 248 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 VN1R3Q9BXE9 311 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 OLFML3Q9NRN5 406 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.76■□□□□ 0.27
SHMT2-204ENST00000553324 CHST7Q9NS84 486 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 KBTBD4Q9NVX7 518 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 DPP7Q9UHL4 492 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 EXOC7Q9UPT5 735 aa16.76■□□□□ 0.27
SHMT2-204ENST00000553324 CASTOR2A6NHX0 329 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 MBTPS2O43462 519 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 TRAPPC3O43617 180 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 GLP2RO95838 553 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 C1RP00736 705 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 HARSP12081 509 aaKnown RBP16.75■□□□□ 0.27
SHMT2-204ENST00000553324 IDEP14735 1019 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 KLRC2P26717 231 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 NMT1P30419 496 aaKnown RBP16.75■□□□□ 0.27
SHMT2-204ENST00000553324 GLUD2P49448 558 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 DSG1Q02413 1049 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 CREMQ03060 361 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 POSTNQ15063 836 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 NAB2Q15742 525 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 SMAD2Q15796 467 aaKnown RBP16.75■□□□□ 0.27
SHMT2-204ENST00000553324 E2F4Q16254 413 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 CEP120Q8N960 986 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 SMRP1Q8NCR6 262 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 DHX58Q96C10 678 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 SNX27Q96L92 541 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 SCAND2PQ9GZW5 306 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-204ENST00000553324 PANK4Q9NVE7 773 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 CNTN3Q9P232 1028 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 BARX2Q9UMQ3 279 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-204ENST00000553324 ZDHHC9Q9Y397 364 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 HCFC2Q9Y5Z7 792 aa16.75■□□□□ 0.27
SHMT2-204ENST00000553324 A0A0B4J269 797 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 FRMD3A2A2Y4 597 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 TMEM189-UBE2V1I3L0A0 370 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 OGTO15294 1046 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 POLR2DO15514 142 aaKnown RBP16.74■□□□□ 0.27
SHMT2-204ENST00000553324 B3GAT3O94766 335 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 ADH1AP07327 375 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 RPL9P32969 192 aaKnown RBP16.74■□□□□ 0.27
SHMT2-204ENST00000553324 NUCB2P80303 420 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 CLUL1Q15846 466 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 KIAA0319Q5VV43 1072 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 RESP18Q5W5W9 173 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 ADALQ6DHV7 355 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 ANKRD54Q6NXT1 300 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 LLGL2Q6P1M3 1020 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 PDXDC1Q6P996 788 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 ELMSAN1Q6PJG2 1045 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 STXBP4Q6ZWJ1 553 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 SFR1Q86XK3 245 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 CD302Q8IX05 232 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 AUTS2Q8WXX7 1259 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 SPATA32Q96LK8 384 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 KLHL5Q96PQ7 755 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 POP1Q99575 1024 aaKnown RBP16.74■□□□□ 0.27
SHMT2-204ENST00000553324 GPR62Q9BZJ7 368 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 RXFP1Q9HBX9 757 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 DZANK1Q9NVP4 752 aa16.74■□□□□ 0.27
SHMT2-204ENST00000553324 PLXNA4Q9HCM2 1894 aa16.73■□□□□ 0.27
SHMT2-204ENST00000553324 MUC3AQ02505 3323 aa16.73■□□□□ 0.27
SHMT2-204ENST00000553324 C2CD2LO14523 706 aa16.73■□□□□ 0.27
SHMT2-204ENST00000553324 CNPP09543 421 aaKnown RBP16.73■□□□□ 0.27
SHMT2-204ENST00000553324 IL9P15248 144 aa16.73■□□□□ 0.27
SHMT2-204ENST00000553324 POU5F1Q01860 360 aaKnown RBP16.73■□□□□ 0.27
SHMT2-204ENST00000553324 ITIH3Q06033 890 aa16.73■□□□□ 0.27
SHMT2-204ENST00000553324 UPP1Q16831 310 aa16.73■□□□□ 0.27
SHMT2-204ENST00000553324 SLC10A6Q3KNW5 377 aa16.73■□□□□ 0.27
SHMT2-204ENST00000553324 ZC2HC1CQ53FD0 456 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-204ENST00000553324 GLRA4Q5JXX5 417 aa16.73■□□□□ 0.27
SHMT2-204ENST00000553324 CES5AQ6NT32 575 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms