RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ABCD1P33897 745 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 COPB2P35606 906 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 RFC5P40937 340 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 PIK3CAP42336 1068 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 LMAN1P49257 510 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 ERVK-9P63128 1117 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 KCTD2Q14681 263 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 ZACNQ401N2 412 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 CPNE8Q86YQ8 564 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 DDX1Q92499 740 aaKnown RBP17.54■□□□□ 0.4
COL4A1-204ENST00000543140 KRT35Q92764 455 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 ZNF668Q96K58 619 aaPredicted RBP17.54■□□□□ 0.4
COL4A1-204ENST00000543140 CALR3Q96L12 384 aaKnown RBP17.54■□□□□ 0.4
COL4A1-204ENST00000543140 FAM204AQ9H8W3 233 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 C4BPAP04003 597 aaKnown RBP17.54■□□□□ 0.4
COL4A1-204ENST00000543140 WDR44Q5JSH3 913 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 LRRC71Q8N4P6 559 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 COPS5Q92905 334 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 CAVIN3Q969G5 261 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 ZNF653Q96CK0 615 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 MMP19Q99542 508 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 NUP85Q9BW27 656 aa17.54■□□□□ 0.4
COL4A1-204ENST00000543140 A0A0B4J269 797 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 VNN1O95497 513 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 SLC25A27O95847 323 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 CLDN10P78369 228 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 GCNT1Q02742 428 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 MOGSQ13724 837 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 HLTFQ14527 1009 aaKnown RBP eCLIP17.53■□□□□ 0.4
COL4A1-204ENST00000543140 SCARA3Q6AZY7 606 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 SLFN12LQ6IEE8 588 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 ZBTB33Q86T24 672 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 CELF4Q9BZC1 486 aaKnown RBP17.53■□□□□ 0.4
COL4A1-204ENST00000543140 KCNH4Q9UQ05 1017 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 LRRC37A2A6NM11 1700 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 ADCY3O60266 1144 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 GRIN3BO60391 1043 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 MAFO75444 373 aaPredicted RBP17.53■□□□□ 0.4
COL4A1-204ENST00000543140 COMTP21964 271 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 HADHBP55084 474 aaKnown RBP17.53■□□□□ 0.4
COL4A1-204ENST00000543140 PPIL2Q13356 520 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 EAPPQ56P03 285 aaPredicted RBP17.53■□□□□ 0.4
COL4A1-204ENST00000543140 PHLDB2Q86SQ0 1253 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 AFAP1L1Q8TED9 768 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 TRAPPC12Q8WVT3 735 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 EXOC4Q96A65 974 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 ZBTB10Q96DT7 871 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 GPR20Q99678 358 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 SYT17Q9BSW7 474 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 TCHPQ9BT92 498 aa17.53■□□□□ 0.4
COL4A1-204ENST00000543140 SIP14410 1827 aa17.52■□□□□ 0.4
COL4A1-204ENST00000543140 CCDC188H7C350 402 aa17.52■□□□□ 0.4
COL4A1-204ENST00000543140 PIGRP01833 764 aa17.52■□□□□ 0.4
COL4A1-204ENST00000543140 EPHX2P34913 555 aa17.52■□□□□ 0.4
COL4A1-204ENST00000543140 OR5B17Q8NGF7 314 aa17.52■□□□□ 0.4
COL4A1-204ENST00000543140 ZNF564Q8TBZ8 553 aaPredicted RBP17.52■□□□□ 0.4
COL4A1-204ENST00000543140 CARD9Q9H257 536 aa17.52■□□□□ 0.4
COL4A1-204ENST00000543140 TRPC6Q9Y210 931 aa17.52■□□□□ 0.4
COL4A1-204ENST00000543140 TTI1O43156 1089 aa17.52■□□□□ 0.39
COL4A1-204ENST00000543140 CYP2C8P10632 490 aa17.52■□□□□ 0.39
COL4A1-204ENST00000543140 SSTR3P32745 418 aaPredicted RBP17.52■□□□□ 0.39
COL4A1-204ENST00000543140 MKRN4PQ13434 485 aaPredicted RBP17.52■□□□□ 0.39
COL4A1-204ENST00000543140 C2CD6Q53TS8 623 aa17.52■□□□□ 0.39
COL4A1-204ENST00000543140 CELF3Q5SZQ8 465 aaKnown RBP17.52■□□□□ 0.39
COL4A1-204ENST00000543140 C11orf63Q6NUN7 778 aa17.52■□□□□ 0.39
COL4A1-204ENST00000543140 DPY19L2Q6NUT2 758 aa17.52■□□□□ 0.39
COL4A1-204ENST00000543140 SPATA33Q96N06 139 aa17.52■□□□□ 0.39
COL4A1-204ENST00000543140 TAF1DQ9H5J8 278 aaPredicted RBP17.52■□□□□ 0.39
COL4A1-204ENST00000543140 PDGFCQ9NRA1 345 aa17.52■□□□□ 0.39
COL4A1-204ENST00000543140 CLDN3O15551 220 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 ZC3H11AO75152 810 aaKnown RBP eCLIP17.51■□□□□ 0.39
COL4A1-204ENST00000543140 GJB1P08034 283 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 TNFSF9P41273 254 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 ENOSF1Q7L5Y1 443 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 DHX37Q8IY37 1157 aaKnown RBP17.51■□□□□ 0.39
COL4A1-204ENST00000543140 RNF149Q8NC42 400 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 CPA5Q8WXQ8 436 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 MPHOSPH6Q99547 160 aaKnown RBP17.51■□□□□ 0.39
COL4A1-204ENST00000543140 APOBEC3GQ9HC16 384 aaKnown RBP17.51■□□□□ 0.39
COL4A1-204ENST00000543140 ERVK-5Q9HDB9 667 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 ADGRA2Q96PE1 1338 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 OSBPP22059 807 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 LAMTOR4Q0VGL1 99 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 ACAD10Q6JQN1 1059 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 GPAT2Q6NUI2 795 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 FAM212AQ96EL1 285 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 TMEM134Q9H6X4 195 aa17.51■□□□□ 0.39
COL4A1-204ENST00000543140 TTC7AQ9ULT0 858 aaPredicted RBP17.51■□□□□ 0.39
COL4A1-204ENST00000543140 DNAJC25-GNG10A0A024R161 153 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 ZBTB42B2RXF5 422 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 KIAA0391O15091 583 aaKnown RBP17.5■□□□□ 0.39
COL4A1-204ENST00000543140 HSF2BPO75031 334 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 LDHAP00338 332 aaKnown RBP17.5■□□□□ 0.39
COL4A1-204ENST00000543140 CYP1A2P05177 515 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 GJA5P36382 358 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 CLEC16AQ2KHT3 1053 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 UBL4BQ8N7F7 174 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 BBXQ8WY36 941 aaPredicted RBP17.5■□□□□ 0.39
COL4A1-204ENST00000543140 ZSWIM1Q9BR11 485 aa17.5■□□□□ 0.39
COL4A1-204ENST00000543140 EFCC1Q9HA90 598 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms