RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 CTTNQ14247 550 aaKnown RBP8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 CATSPERGQ6ZRH7 1159 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 CREG2Q8IUH2 290 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 SEC16BQ96JE7 1060 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 ATP6V1G3Q96LB4 118 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 TAAR1Q96RJ0 339 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 RIT2Q99578 217 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 TUBGCP2Q9BSJ2 902 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 ZNF577Q9BSK1 485 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 BCAS3Q9H6U6 928 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 SYNCQ9H7C4 482 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 EPB41L5Q9HCM4 733 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 PAPOLBQ9NRJ5 636 aaKnown RBP8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 ADARB2Q9NS39 739 aaKnown RBP8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 HOMER2Q9NSB8 354 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 ZNHIT6Q9NWK9 470 aaKnown RBP8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 DNM3Q9UQ16 869 aa8.56□□□□□ -1.04
PDLIM5-221ENST00000542407 B4DLN1 442 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 ATP2A1O14983 1001 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 GAS7O60861 476 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 ZBED4O75132 1171 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 CSPG5O95196 566 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 LDHAP00338 332 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 ZFXP17010 805 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 MUTP22033 750 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 HOXD13P35453 343 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 PAFAH1B1P43034 410 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 CASP5P51878 434 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 OAZ1P54368 228 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 RNASE9P60153 205 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 ELF3P78545 371 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 PGM5Q15124 567 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 TKFCQ3LXA3 575 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 THOC7Q6I9Y2 204 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 TBC1D1Q86TI0 1168 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 MMGT1Q8N4V1 131 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 MAGEC3Q8TD91 643 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 SREK1Q8WXA9 508 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 SYT17Q9BSW7 474 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 NUP58Q9BVL2 599 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 WDR11Q9BZH6 1224 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 AGO4Q9HCK5 861 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 KCNH7Q9NS40 1196 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 TIMM22Q9Y584 194 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 ZBTB39O15060 712 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 NCK2O43639 380 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 ATP9BO43861 1147 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 KDM1AO60341 852 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 DIAPH2O60879 1101 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 CUL3Q13618 768 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 VGLL4Q14135 290 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 TRIM14Q14142 442 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 TMEM132BQ14DG7 1078 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 EPHA7Q15375 998 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 LMBRD2Q68DH5 695 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 C1orf186Q6ZWK4 172 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 NDUFAF2Q8N183 169 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 OR2W6PQ8NHA6 318 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 PURBQ96QR8 312 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 IWS1Q96ST2 819 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 BHMT2Q9H2M3 363 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 PXMP2Q9NR77 195 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 BMP2KQ9NSY1 1161 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 TUBA8Q9NY65 449 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 RNF181Q9P0P0 153 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 SNX12Q9UMY4 172 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 RSPH10B2B2RC85 870 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 ADM5C9JUS6 153 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 CHMP2AO43633 222 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 SGTAO43765 313 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 RSPH10BP0C881 870 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 HSPA1AP0DMV8 641 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 HSPA1BP0DMV9 641 aaKnown RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 FERP16591 822 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 CYLC1P35663 651 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 KCTD19Q17RG1 926 aaPredicted RBP8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 MAP7D1Q3KQU3 841 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 SUPT20HL1Q3ZLR7 823 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 RINT1Q6NUQ1 792 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 DPY19L2Q6NUT2 758 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 KRT26Q7Z3Y9 468 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 SLC15A3Q8IY34 581 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 KIAA1958Q8N8K9 716 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 ERGIC2Q96RQ1 377 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 PDCD2LQ9BRP1 358 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 TEKT3Q9BXF9 490 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 MLXIPQ9HAP2 919 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 PLAAQ9Y263 795 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 SCINQ9Y6U3 715 aa8.55□□□□□ -1.04
PDLIM5-221ENST00000542407 SPDYE5A6NIY4 337 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 SPDYE16A6NNV3 312 aaPredicted RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 P4HA2O15460 535 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 SART1O43290 800 aaKnown RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 MGRN1O60291 552 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 MOCS3O95396 460 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 GLI1P08151 1106 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 RPL17P18621 184 aaKnown RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 TCF7P36402 384 aaPredicted RBP8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 KLK7P49862 253 aa8.54□□□□□ -1.04
PDLIM5-221ENST00000542407 DNM2P50570 870 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms