RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SLC39A4Q6P5W5 647 aa15.55■□□□□ 0.08
USP28-209ENST00000540925 SHC4Q6S5L8 630 aa15.55■□□□□ 0.08
USP28-209ENST00000540925 CD300LGQ6UXG3 332 aa15.55■□□□□ 0.08
USP28-209ENST00000540925 MAP4K3Q8IVH8 894 aa15.55■□□□□ 0.08
USP28-209ENST00000540925 SPRYD3Q8NCJ5 442 aa15.55■□□□□ 0.08
USP28-209ENST00000540925 FOXD4L4Q8WXT5 416 aaPredicted RBP15.55■□□□□ 0.08
USP28-209ENST00000540925 DDX12PQ92771 950 aa15.55■□□□□ 0.08
USP28-209ENST00000540925 SNX27Q96L92 541 aa15.55■□□□□ 0.08
USP28-209ENST00000540925 ZMAT2Q96NC0 199 aaKnown RBP15.55■□□□□ 0.08
USP28-209ENST00000540925 RXFP1Q9HBX9 757 aa15.55■□□□□ 0.08
USP28-209ENST00000540925 CNTN3Q9P232 1028 aa15.55■□□□□ 0.08
USP28-209ENST00000540925 FAM50BQ9Y247 325 aa15.55■□□□□ 0.08
USP28-209ENST00000540925 CASTOR2A6NHX0 329 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 TMEM189-UBE2V1I3L0A0 370 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 CUTAO60888 179 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 TBCAO75347 108 aaKnown RBP15.54■□□□□ 0.08
USP28-209ENST00000540925 NR1I2O75469 434 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 KIF4AO95239 1232 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 CNPP09543 421 aaKnown RBP15.54■□□□□ 0.08
USP28-209ENST00000540925 HOXB8P17481 243 aaPredicted RBP15.54■□□□□ 0.08
USP28-209ENST00000540925 IGFBP6P24592 240 aaPredicted RBP15.54■□□□□ 0.08
USP28-209ENST00000540925 NMT1P30419 496 aaKnown RBP15.54■□□□□ 0.08
USP28-209ENST00000540925 SOX4Q06945 474 aaPredicted RBP15.54■□□□□ 0.08
USP28-209ENST00000540925 FUT10Q6P4F1 479 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 SV2BQ7L1I2 683 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 ZBTB33Q86T24 672 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 ADHFE1Q8IWW8 467 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 RABGGTAQ92696 567 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 CASP10Q92851 521 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 FAM122AQ96E09 287 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 KLHL5Q96PQ7 755 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 MRPL17Q9NRX2 175 aaKnown RBP15.54■□□□□ 0.08
USP28-209ENST00000540925 RCOR1Q9UKL0 485 aa15.54■□□□□ 0.08
USP28-209ENST00000540925 USP15Q9Y4E8 981 aaPredicted RBP15.54■□□□□ 0.08
USP28-209ENST00000540925 PDCD11Q14690 1871 aaKnown RBP15.53■□□□□ 0.08
USP28-209ENST00000540925 K7ENM7 598 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 PAPLNO95428 1278 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 KRT18P05783 430 aaKnown RBP15.53■□□□□ 0.08
USP28-209ENST00000540925 SRGAP2BP0DMP2 458 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 EPCAMP16422 314 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 ABCD1P33897 745 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 STAT6P42226 847 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 GLUD2P49448 558 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 CLCN4P51793 760 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 UPP1Q16831 310 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 SLC10A6Q3KNW5 377 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 GLRA4Q5JXX5 417 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 LLGL2Q6P1M3 1020 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 DYMQ7RTS9 669 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 ZNF720Q7Z2F6 126 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 SFR1Q86XK3 245 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 KCNG4Q8TDN1 519 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 KHSRPQ92945 711 aaKnown RBP eCLIP15.53■□□□□ 0.08
USP28-209ENST00000540925 ACAP3Q96P50 834 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 CCDC94Q9BW85 323 aaPredicted RBP15.53■□□□□ 0.08
USP28-209ENST00000540925 PANK2Q9BZ23 570 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 TOPORSQ9NS56 1045 aaPredicted RBP15.53■□□□□ 0.08
USP28-209ENST00000540925 KBTBD4Q9NVX7 518 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 ANKFY1Q9P2R3 1169 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 SEL1LQ9UBV2 794 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 STYXL1Q9Y6J8 313 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 CITO14578 2027 aa15.53■□□□□ 0.08
USP28-209ENST00000540925 A0A0B4J269 797 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 TEX28O15482 410 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 CLDN3O15551 220 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 C1RP00736 705 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 URODP06132 367 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 ADRB2P07550 413 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 HOXD11P31277 338 aaPredicted RBP15.52■□□□□ 0.08
USP28-209ENST00000540925 OSTNP61366 133 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 DNM1Q05193 864 aaKnown RBP15.52■□□□□ 0.08
USP28-209ENST00000540925 USP41Q3LFD5 358 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 ZC2HC1CQ53FD0 456 aaPredicted RBP15.52■□□□□ 0.08
USP28-209ENST00000540925 CNNM4Q6P4Q7 775 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 PPFIBP1Q86W92 1011 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 GJD3Q8N144 294 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 C3orf58Q8NDZ4 430 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 B3GALT6Q96L58 329 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 UROC1Q96N76 676 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 TCHPQ9BT92 498 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 EMILIN2Q9BXX0 1053 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 OLFML3Q9NRN5 406 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 FNIP2Q9P278 1114 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 PCDHA7Q9UN72 937 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 SSX2IPQ9Y2D8 614 aa15.52■□□□□ 0.08
USP28-209ENST00000540925 PIEZO1Q92508 2521 aa15.51■□□□□ 0.07
USP28-209ENST00000540925 VWA8A3KMH1 1905 aa15.51■□□□□ 0.07
USP28-209ENST00000540925 SF3B1O75533 1304 aaKnown RBP eCLIP15.51■□□□□ 0.07
USP28-209ENST00000540925 TTC26A0AVF1 554 aa15.51■□□□□ 0.07
USP28-209ENST00000540925 HNRNPDLO14979 420 aaKnown RBP15.51■□□□□ 0.07
USP28-209ENST00000540925 GAP43P17677 238 aa15.51■□□□□ 0.07
USP28-209ENST00000540925 CLCNKBP51801 687 aa15.51■□□□□ 0.07
USP28-209ENST00000540925 YARSP54577 528 aaKnown RBP15.51■□□□□ 0.07
USP28-209ENST00000540925 FOXD4L6Q3SYB3 417 aaPredicted RBP15.51■□□□□ 0.07
USP28-209ENST00000540925 SEZ6Q53EL9 994 aa15.51■□□□□ 0.07
USP28-209ENST00000540925 RTP2Q5QGT7 225 aa15.51■□□□□ 0.07
USP28-209ENST00000540925 ZBTB41Q5SVQ8 909 aa15.51■□□□□ 0.07
USP28-209ENST00000540925 RESP18Q5W5W9 173 aa15.51■□□□□ 0.07
USP28-209ENST00000540925 FOXD4L3Q6VB84 417 aaPredicted RBP15.51■□□□□ 0.07
USP28-209ENST00000540925 PDILTQ8N807 584 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms