RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 PCDHB2Q9Y5E7 798 aa11.48□□□□□ -0.57
VPS33A-204ENST00000540669 LAMA3Q16787 3333 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 GBF1Q92538 1859 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 A0A1B0GTH6 734 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 MEIS3P2A8K0S8 358 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 PTGESO14684 152 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 EXOC3O60645 756 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 RECQL4O94761 1208 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 FGFR1OPO95684 399 aaKnown RBP11.47□□□□□ -0.57
VPS33A-204ENST00000540669 STAG3L1P0CL83 205 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 CXCL8P10145 99 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 PBX1P40424 430 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 ACOT2P49753 483 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 PPP2R3AQ06190 1150 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 NFX1Q12986 1120 aaKnown RBP11.47□□□□□ -0.57
VPS33A-204ENST00000540669 PPIGQ13427 754 aaKnown RBP eCLIP11.47□□□□□ -0.57
VPS33A-204ENST00000540669 KRT31Q15323 416 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 DPY19L2P1Q6NXN4 242 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 APBB1IPQ7Z5R6 666 aaPredicted RBP11.47□□□□□ -0.57
VPS33A-204ENST00000540669 RNF214Q8ND24 703 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 RSPH1Q8WYR4 309 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 TSPAN18Q96SJ8 248 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 FAM213AQ9BRX8 229 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 CXCL16Q9H2A7 254 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 ASB7Q9H672 318 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 PLEKHA5Q9HAU0 1116 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 TMEM161AQ9NX61 479 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 RBAKQ9NYW8 714 aaPredicted RBP11.47□□□□□ -0.57
VPS33A-204ENST00000540669 ARMCX3Q9UH62 379 aaPredicted RBP11.47□□□□□ -0.57
VPS33A-204ENST00000540669 DERAQ9Y315 318 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 COQ4Q9Y3A0 265 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 C2CD2Q9Y426 696 aa11.47□□□□□ -0.57
VPS33A-204ENST00000540669 ABHD14A-ACY1A0A1B0GW23 586 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 GOLGA8IPA6NC78 632 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 ZNF233A6NK53 670 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 GOLGA8JA6NMD2 632 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 LRRIQ3A6PVS8 624 aaPredicted RBP11.46□□□□□ -0.57
VPS33A-204ENST00000540669 LGALS16A8MUM7 142 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 KCNJ18B7U540 433 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 HAX1O00165 279 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 ENPP3O14638 875 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 EFCAB14O75071 495 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 IL18RAPO95256 599 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 EOMESO95936 686 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 EPB41P11171 864 aaKnown RBP11.46□□□□□ -0.57
VPS33A-204ENST00000540669 SKIP12755 728 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 DLG4P78352 724 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 FPGSQ05932 587 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 NCBP1Q09161 790 aaKnown RBP11.46□□□□□ -0.57
VPS33A-204ENST00000540669 KCNJ12Q14500 433 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 MAN2A1Q16706 1144 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 UVSSAQ2YD98 709 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 SEZ6Q53EL9 994 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 CLLU1OSQ5K130 101 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 TWF2Q6IBS0 349 aaKnown RBP11.46□□□□□ -0.57
VPS33A-204ENST00000540669 ZBTB33Q86T24 672 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 NT5DC4Q86YG4 428 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 WDR49Q8IV35 697 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 FAM114A1Q8IWE2 563 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 ZMAT2Q96NC0 199 aaKnown RBP11.46□□□□□ -0.57
VPS33A-204ENST00000540669 PPP1R10Q96QC0 940 aaKnown RBP11.46□□□□□ -0.57
VPS33A-204ENST00000540669 CGRRF1Q99675 332 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 SNTG2Q9NY99 539 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 PCDH10Q9P2E7 1040 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 GIT1Q9Y2X7 761 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 HES2Q9Y543 173 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 SCN1AP35498 2009 aa11.46□□□□□ -0.57
VPS33A-204ENST00000540669 GTPBP10A4D1E9 387 aaKnown RBP11.45□□□□□ -0.58
VPS33A-204ENST00000540669 PRKCSHP14314 528 aaPredicted RBP11.45□□□□□ -0.58
VPS33A-204ENST00000540669 GTF2H1P32780 548 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 BMP8BP34820 402 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 MAGEA10P43363 369 aaPredicted RBP11.45□□□□□ -0.58
VPS33A-204ENST00000540669 COPB1P53618 953 aaKnown RBP11.45□□□□□ -0.58
VPS33A-204ENST00000540669 WDR5P61964 334 aaKnown RBP11.45□□□□□ -0.58
VPS33A-204ENST00000540669 PPP3CAQ08209 521 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 ZACNQ401N2 412 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 TMEM240Q5SV17 173 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 CEP135Q66GS9 1140 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 PSRC1Q6PGN9 363 aaPredicted RBP11.45□□□□□ -0.58
VPS33A-204ENST00000540669 NPAS4Q8IUM7 802 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 CD302Q8IX05 232 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 THNSL1Q8IYQ7 743 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 RPUSD2Q8IZ73 545 aaKnown RBP11.45□□□□□ -0.58
VPS33A-204ENST00000540669 ZNF516Q92618 1163 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 BADQ92934 168 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 TUBGCP2Q9BSJ2 902 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 CCDC94Q9BW85 323 aaPredicted RBP11.45□□□□□ -0.58
VPS33A-204ENST00000540669 PDE11AQ9HCR9 933 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 PLAGL2Q9UPG8 496 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 FRMD4BQ9Y2L6 1034 aa11.45□□□□□ -0.58
VPS33A-204ENST00000540669 BECN2A8MW95 431 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 LACTBL1A8MY62 500 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 P4HA2O15460 535 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 B4GALT3O60512 393 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 NFICP08651 508 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 LINC00271P0C7V0 271 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 TRIM49P0CI25 452 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 TRIM49CP0CI26 452 aa11.44□□□□□ -0.58
VPS33A-204ENST00000540669 HARSP12081 509 aaKnown RBP11.44□□□□□ -0.58
VPS33A-204ENST00000540669 ACTN1P12814 892 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms