RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	TRAPPC10	P48553	1259 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	IFRD2	Q12894	506 aa	Predicted RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	P3H2	Q8IVL5	708 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	SYTL1	Q8IYJ3	562 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	PPP1R36	Q96LQ0	422 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	TEX12	Q9BXU0	123 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	CALN1	Q9BXU9	219 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	C6orf62	Q9GZU0	229 aa	Predicted RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	GPCPD1	Q9NPB8	672 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	UBE2T	Q9NPD8	197 aa	Predicted RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	PCDH12	Q9NPG4	1184 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	GIN1	Q9NXP7	522 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	SNX13	Q9Y5W8	968 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447		A0A087WXM4	84 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	NEMP1	O14524	444 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	SLC1A4	P43007	532 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	NCKAP1L	P55160	1127 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	OVGP1	Q12889	678 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	LPIN1	Q14693	890 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	LBR	Q14739	615 aa	Known RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	COG2	Q14746	738 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	PPP1R15B	Q5SWA1	713 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	TTC27	Q6P3X3	843 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	PASD1	Q8IV76	773 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	PPCS	Q9HAB8	311 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	RSL24D1	Q9UHA3	163 aa	Known RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	BTBD3	Q9Y2F9	522 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	PNMA8C	A0A1B0GUJ8	204 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	TRIM49B	A6NDI0	452 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ZBED1	O96006	694 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	S100A6	P06703	90 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	SNRPA1	P09661	255 aa	Known RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ITGA9	Q13797	1035 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	TSC22D1	Q15714	1073 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	NEDD8	Q15843	81 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	MTHFD1L	Q6UB35	978 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	C16orf62	Q7Z3J2	963 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ENKUR	Q8TC29	256 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	EDC3	Q96F86	508 aa	Known RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ADAM33	Q9BZ11	813 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	SPRTN	Q9H040	489 aa	Predicted RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ITIH6	Q6UXX5	1313 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	LAD1	O00515	517 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	PHF2	O75151	1096 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	P4HA1	P13674	534 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	PRR23C	Q6ZRP0	262 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	CYFIP1	Q7L576	1253 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	NUP93	Q8N1F7	819 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	GIMAP8	Q8ND71	665 aa	Predicted RBP	9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	AK8	Q96MA6	479 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	TINF2	Q9BSI4	451 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	PARVA	Q9NVD7	372 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	CACNA2D2	Q9NY47	1150 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	TAGLN3	Q9UI15	199 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	TAF5L	O75529	589 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	TOMM70	O94826	608 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	HOXA7	P31268	230 aa	Predicted RBP	9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	NUDT2	P50583	147 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	NR1H2	P55055	460 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	ARPP19	P56211	112 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	SYDE1	Q6ZW31	735 aa	Predicted RBP	9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	OLFM1	Q99784	485 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	DDX50	Q9BQ39	737 aa	Known RBP	9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	RUBCNL	Q9H714	662 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	MARCH7	Q9H992	704 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	9.21	□□□□□ -0.93	4e-26	■■■□□ 16.2
YBX3-208	ENST00000540447	ZNF277	Q9NRM2	450 aa	Predicted RBP	9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	DMTF1	Q9Y222	760 aa		9.21	□□□□□ -0.93
YBX3-208	ENST00000540447	RNF103	O00237	685 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	ZSCAN9	O15535	394 aa	Predicted RBP	9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	TRAPPC3	O43617	180 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	ITIH2	P19823	946 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	GPC5	P78333	572 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	BNC1	Q01954	994 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	NCCRP1	Q6ZVX7	275 aa	Predicted RBP	9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	C1orf54	Q8WWF1	131 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	MLPH	Q9BV36	600 aa	Predicted RBP	9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	PACSIN1	Q9BY11	444 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	CCSER1	Q9C0I3	900 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	WNT8A	Q9H1J5	351 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	ATPIF1	Q9UII2	106 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	PCDHA12	Q9UN75	941 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	CCDC162P	A2VCL2	907 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	GNB5	O14775	395 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	AREL1	O15033	823 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	DGKI	O75912	1065 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	ARL6IP4	Q66PJ3	421 aa	Known RBP	9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	NSMF	Q6X4W1	530 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	TPH2	Q8IWU9	490 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	RYBP	Q8N488	228 aa	Predicted RBP	9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	EXT2	Q93063	718 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	STOML2	Q9UJZ1	356 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447		A0A1W2PRG6	482 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	CCDC182	A6NF36	153 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	NDUFB5	O43674	189 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	MMP1	P03956	469 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	PML	P29590	882 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	EGFLAM	Q63HQ2	1017 aa		9.21	□□□□□ -0.94
YBX3-208	ENST00000540447	ZBTB49	Q6ZSB9	765 aa		9.21	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms