RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 TSPYL2Q9H2G4 693 aaPredicted RBP20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 RPF1Q9H9Y2 349 aaKnown RBP20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 PDE11AQ9HCR9 933 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 IL23AQ9NPF7 189 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 C9IYK1 514 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TULP1O00294 542 aaPredicted RBP20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 ZNF623O75123 536 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 SERPINC1P01008 464 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 PRKCSHP14314 528 aaPredicted RBP20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 AKAP5P24588 427 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 MCCD1P59942 119 aaPredicted RBP20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 MAN2A1Q16706 1144 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 SLC10A6Q3KNW5 377 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 DCAF17Q5H9S7 520 aaPredicted RBP20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 MIIPQ5JXC2 388 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 C1orf220Q5T0J3 134 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TET1Q8NFU7 2136 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TMC2Q8TDI7 906 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 NAP1L5Q96NT1 182 aaPredicted RBP20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 VPS16Q9H269 839 aa20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.54■□□□□ 0.88
TNFRSF1A-213ENST00000540022 MEIS3P2A8K0S8 358 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 ENPP3O14638 875 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 RECQL4O94761 1208 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TRIM49P0CI25 452 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TRIM49CP0CI26 452 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 ATF7P17544 494 aaPredicted RBP20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 RAB27AP51159 221 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 POU5F1Q01860 360 aaKnown RBP20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 PPIGQ13427 754 aaKnown RBP eCLIP20.53■□□□□ 0.886e-8■■■■□ 21.4
TNFRSF1A-213ENST00000540022 TCERG1LQ5VWI1 586 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 CNKSR3Q6P9H4 555 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 SARM1Q6SZW1 724 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 MRPL10Q7Z7H8 261 aaKnown RBP20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 ECHDC2Q86YB7 292 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 FAM212AQ96EL1 285 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 POP1Q99575 1024 aaKnown RBP20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 CDH23Q9H251 3354 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 MYO9BQ13459 2157 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TTC26A0AVF1 554 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 LRRIQ3A6PVS8 624 aaPredicted RBP20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 IBSPP21815 317 aaPredicted RBP20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 FAM43BQ6ZT52 329 aaPredicted RBP20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 ZNF365Q70YC5 407 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 SLC24A5Q71RS6 500 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 LPPQ93052 612 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.53■□□□□ 0.883e-6■■■□□ 18.5
TNFRSF1A-213ENST00000540022 CXCL16Q9H2A7 254 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 C1orf112Q9NSG2 853 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 IFNKQ9P0W0 207 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 PARP2Q9UGN5 583 aa20.53■□□□□ 0.88
TNFRSF1A-213ENST00000540022 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 LACTBL1A8MY62 500 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 DLATP10515 647 aaKnown RBP20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 ITGA4P13612 1032 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 MRE11P49959 708 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 YARSP54577 528 aaKnown RBP20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 UBASH3AP57075 661 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 FAM189BP81408 668 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 VWA3BQ502W6 1294 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 TMEM240Q5SV17 173 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 AGMOQ6ZNB7 445 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 FAM84AQ96KN4 292 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 SNX27Q96L92 541 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 FNBP1Q96RU3 617 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 NDST4Q9H3R1 872 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 TOPORSQ9NS56 1045 aaPredicted RBP20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 PTPRJQ12913 1337 aa20.52■□□□□ 0.87
TNFRSF1A-213ENST00000540022 A0A1B0GTH6 734 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 IL18RAPO95256 599 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 SKIP12755 728 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 PPP2R3AQ06190 1150 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 ENPEPQ07075 957 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 PPP3CAQ08209 521 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 KCNH2Q12809 1159 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 LMBRD2Q68DH5 695 aaPredicted RBP20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 OTOP2Q7RTS6 562 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 ZNF598Q86UK7 904 aaKnown RBP20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 HACE1Q8IYU2 909 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 RPUSD2Q8IZ73 545 aaKnown RBP20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 RNPC3Q96LT9 517 aaKnown RBP20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 XPO4Q9C0E2 1151 aaKnown RBP20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 PLEKHA5Q9HAU0 1116 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 INTS13Q9NVM9 706 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 KLK14Q9P0G3 267 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 GBF1Q92538 1859 aa20.51■□□□□ 0.87
TNFRSF1A-213ENST00000540022 PES1O00541 588 aaKnown RBP20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 CLDN10P78369 228 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 IKBKEQ14164 716 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 ALKAL1Q6UXT8 129 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 Q7L0L9 218 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 USP37Q86T82 979 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 RNF169Q8NCN4 708 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 ZNF516Q92618 1163 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 CGRRF1Q99675 332 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 TRIM5Q9C035 493 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 ASB7Q9H672 318 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 MMRN2Q9H8L6 949 aa20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 RTN4Q9NQC3 1192 aaKnown RBP20.5■□□□□ 0.87
TNFRSF1A-213ENST00000540022 RNF19AQ9NV58 838 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms