RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 MAP2K1Q02750 393 aaPredicted RBP13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 FKBP1CQ5VVH2 108 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 TRIM68Q6AZZ1 485 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 TTC27Q6P3X3 843 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 TRPM8Q7Z2W7 1104 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 C12orf56Q8IXR9 622 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 TTLL6Q8N841 843 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 EPS8L1Q8TE68 723 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 TXLNGYQ9BZA5 131 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 SLC38A10Q9HBR0 1119 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 TOPORSQ9NS56 1045 aaPredicted RBP13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 ZDHHC18Q9NUE0 388 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 CTTNBP2NLQ9P2B4 639 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 ENO4A6NNW6 628 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 CYP26A1O43174 497 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 ALDH5A1P51649 535 aaPredicted RBP13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 GHRHRQ02643 423 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 XRCC4Q13426 336 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 NUGGCQ68CJ6 796 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 FAM47EQ6ZV65 393 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 PRUNE1Q86TP1 453 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 MICAL1Q8TDZ2 1067 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 ATXN2LQ8WWM7 1075 aaKnown RBP13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 BSNDQ8WZ55 320 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 TEPSINQ96N21 525 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 ECT2Q9H8V3 914 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 RIPK3Q9Y572 518 aa13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 ATXN2Q99700 1313 aaKnown RBP13.46□□□□□ -0.25
SFSWAP-208ENST00000539506 MGRN1O60291 552 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 MAPTP10636 758 aaKnown RBP13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 MYCLP12524 364 aaPredicted RBP13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 PEX5P50542 639 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 NCKAP1LP55160 1127 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 CXCL9Q07325 125 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 FER1L6Q2WGJ9 1857 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 DAB2IPQ5VWQ8 1189 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 DUPD1Q68J44 220 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 SLC39A4Q6P5W5 647 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 ZDHHC24Q6UX98 284 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 ANO5Q75V66 913 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 NIPA1Q7RTP0 329 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 CCDC105Q8IYK2 499 aa13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 A1CFQ9NQ94 594 aaKnown RBP13.46□□□□□ -0.26
SFSWAP-208ENST00000539506 LYPLA2O95372 231 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 CCNHP51946 323 aaPredicted RBP13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 RASA3Q14644 834 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 PLCB4Q15147 1175 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 C2CD6Q53TS8 623 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 ERICH1Q86X53 443 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 FAM71AQ8IYT1 594 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 MTMR14Q8NCE2 650 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 TMEM161BQ8NDZ6 487 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 C1orf54Q8WWF1 131 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 CCDC127Q96BQ5 260 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 SPDL1Q96EA4 605 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 FAM114A2Q9NRY5 505 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 KRT16P08779 473 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 DPEP1P16444 411 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 COMTP21964 271 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 HADHBP55084 474 aaKnown RBP13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 EN1Q05925 392 aaPredicted RBP13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 FAM102BQ5T8I3 360 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 CAPN12Q6ZSI9 719 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 PRELID2Q8N945 189 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 TLCD1Q96CP7 247 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 FAXDC2Q96IV6 333 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 PLCD4Q9BRC7 762 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 PFASO15067 1338 aa13.45□□□□□ -0.26
SFSWAP-208ENST00000539506 C5orf60A6NFR6 353 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 RFX1P22670 979 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 PTGIRP43119 386 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 FMO1Q01740 532 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 SNRNP35Q16560 246 aaKnown RBP13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 FAM182AQ5T1J6 154 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 DHX38Q92620 1227 aaKnown RBP13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 PABPC3Q9H361 631 aaKnown RBP13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 ST6GALNAC4Q9H4F1 302 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 KIAA0391O15091 583 aaKnown RBP13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 PYGMP11217 842 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 NPTX2P47972 431 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 MXI1P50539 228 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 GPC5P78333 572 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 C4orf19Q8IY42 314 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 RTKN2Q8IZC4 609 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 PPM1KQ8N3J5 372 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 HELQQ8TDG4 1101 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 ATG4AQ8WYN0 398 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 CD101Q93033 1021 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 KLHL29Q96CT2 875 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 KDM4CQ9H3R0 1056 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 TBX20Q9UMR3 447 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 PCDHA3Q9Y5H8 950 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 ADGRA3Q8IWK6 1321 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 RASGRF2O14827 1237 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 P4HA2O15460 535 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 PPFIA2O75334 1257 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 CNGA1P29973 690 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 GCKP35557 465 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 ERFP50548 548 aa13.44□□□□□ -0.26
SFSWAP-208ENST00000539506 MCCD1P59942 119 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms