RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RBM25P49756 843 aaKnown RBP14.99□□□□□ -0.01
SS18-204ENST00000539244 PRPF4BQ13523 1007 aaKnown RBP14.99□□□□□ -0.01
SS18-204ENST00000539244 MAPK6Q16659 721 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 UVSSAQ2YD98 709 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 PPM1LQ5SGD2 360 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 LIN9Q5TKA1 542 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 MTSS1LQ765P7 747 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 RTL10Q7L3V2 364 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 MAEAQ7L5Y9 396 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 C1orf210Q8IVY1 113 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 PJA1Q8NG27 643 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 HASPINQ8TF76 798 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 BSNDQ8WZ55 320 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 ADPGKQ9BRR6 497 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 RPP25Q9BUL9 199 aaKnown RBP14.99□□□□□ -0.01
SS18-204ENST00000539244 DDX23Q9BUQ8 820 aaKnown RBP14.99□□□□□ -0.01
SS18-204ENST00000539244 OTOGLQ3ZCN5 2332 aa14.99□□□□□ -0.01
SS18-204ENST00000539244 MIA3Q5JRA6 1907 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 CACNA1AO00555 2505 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 ADAM12O43184 909 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 XYLBO75191 536 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 PRKCBP05771 671 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 DCNP07585 359 aaKnown RBP14.98□□□□□ -0.01
SS18-204ENST00000539244 GLULP15104 373 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 CYP11B2P19099 503 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 RPA1P27694 616 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 NAMPTP43490 491 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 RAB33AQ14088 237 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 ZC3H14Q6PJT7 736 aaKnown RBP14.98□□□□□ -0.01
SS18-204ENST00000539244 PADI6Q6TGC4 694 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 PARM1Q6UWI2 310 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.98□□□□□ -0.01
SS18-204ENST00000539244 FGF13Q92913 245 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 SHDQ96IW2 340 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 CXCL16Q9H2A7 254 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 DMXL1Q9Y485 3027 aa14.98□□□□□ -0.01
SS18-204ENST00000539244 TRIP11Q15643 1979 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 JAK2O60674 1132 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 EDN1P05305 212 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 SP9P0CG40 484 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 MUTP22033 750 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 FGFR3P22607 806 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 GPC5P78333 572 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 NTHL1P78549 312 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 ORC2Q13416 577 aaPredicted RBP14.97□□□□□ -0.01
SS18-204ENST00000539244 TRIM29Q14134 588 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 PPP2R5AQ15172 486 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 DCAF4L1Q3SXM0 396 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 SPECC1Q5M775 1068 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 CEP57Q86XR8 500 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 NOSTRINQ8IVI9 506 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 PPP1R10Q96QC0 940 aaKnown RBP14.97□□□□□ -0.01
SS18-204ENST00000539244 OSBPL6Q9BZF3 934 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 FOXQ1Q9C009 403 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 MTRRQ9UBK8 725 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 KCNH3Q9ULD8 1083 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 R4GN57 208 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 DNAH14Q0VDD8 3507 aa14.97□□□□□ -0.01
SS18-204ENST00000539244 KANSL1LA0AUZ9 987 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 CCL16O15467 120 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 MCM7P33993 719 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 PRKCQQ04759 706 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 AXDND1Q5T1B0 1012 aaPredicted RBP14.96□□□□□ -0.01
SS18-204ENST00000539244 EEF1DP3Q658K8 133 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 RSPO2Q6UXX9 243 aaPredicted RBP14.96□□□□□ -0.01
SS18-204ENST00000539244 ERMNQ8TAM6 284 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 DEPTORQ8TB45 409 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 SLC7A14Q8TBB6 771 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 KCNG4Q8TDN1 519 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 BORCS6Q96GS4 357 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 BACE2Q9Y5Z0 518 aa14.96□□□□□ -0.01
SS18-204ENST00000539244 PATJQ8NI35 1801 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 ARHGEF35A5YM69 484 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 OR52Z1P0C646 297 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 OR1D2P34982 312 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 EFNA5P52803 228 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 PFKPQ01813 784 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 ST3GAL1Q11201 340 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 MLF2Q15773 248 aaPredicted RBP14.95□□□□□ -0.02
SS18-204ENST00000539244 TMEM132AQ24JP5 1023 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 ZNF528Q3MIS6 628 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 CD300LGQ6UXG3 332 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 NPAS3Q8IXF0 933 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 MAML2Q8IZL2 1156 aaPredicted RBP14.95□□□□□ -0.02
SS18-204ENST00000539244 ST13P5Q8NFI4 369 aaPredicted RBP14.95□□□□□ -0.02
SS18-204ENST00000539244 ITFG1Q8TB96 612 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 UROC1Q96N76 676 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 AVENQ9NQS1 362 aaPredicted RBP14.95□□□□□ -0.02
SS18-204ENST00000539244 WDR87Q6ZQQ6 2873 aa14.95□□□□□ -0.02
SS18-204ENST00000539244 B3GAT3O94766 335 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 IGFBP6P24592 240 aaPredicted RBP14.94□□□□□ -0.02
SS18-204ENST00000539244 MAGEA9P43362 315 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 CLCNKBP51801 687 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 FOSBP53539 338 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 SNW1Q13573 536 aaKnown RBP14.94□□□□□ -0.02
SS18-204ENST00000539244 SAFBQ15424 915 aaKnown RBP eCLIP14.94□□□□□ -0.02
SS18-204ENST00000539244 UPP1Q16831 310 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 PABPC1LQ4VXU2 614 aaKnown RBP14.94□□□□□ -0.02
SS18-204ENST00000539244 SLC44A4Q53GD3 710 aa14.94□□□□□ -0.02
SS18-204ENST00000539244 XKR4Q5GH76 650 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms