RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 CARD9Q9H257 536 aa7.2□□□□□ -1.26
USP28-207ENST00000538475 ADAM7Q9H2U9 754 aa7.2□□□□□ -1.26
USP28-207ENST00000538475 EPB41L1Q9H4G0 881 aa7.2□□□□□ -1.26
USP28-207ENST00000538475 NLRC4Q9NPP4 1024 aa7.2□□□□□ -1.26
USP28-207ENST00000538475 DNAJB4Q9UDY4 337 aa7.2□□□□□ -1.26
USP28-207ENST00000538475 CCDC9Q9Y3X0 531 aaKnown RBP7.2□□□□□ -1.26
USP28-207ENST00000538475 BAZ2AQ9UIF9 1905 aaKnown RBP7.2□□□□□ -1.26
USP28-207ENST00000538475 PCDH11XQ9BZA7 1347 aa7.2□□□□□ -1.26
USP28-207ENST00000538475 DUOX1Q9NRD9 1551 aa7.2□□□□□ -1.26
USP28-207ENST00000538475 LOXHD1Q8IVV2 1947 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 BAZ2BQ9UIF8 2168 aaKnown RBP7.19□□□□□ -1.26
USP28-207ENST00000538475 ESYT3A0FGR9 886 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 CARNS1A5YM72 827 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 TRIM49BA6NDI0 452 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 KCNK3O14649 394 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 ZBTB39O15060 712 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 MAPK13O15264 365 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 MAGEB2O15479 319 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 ZSCAN9O15535 394 aaPredicted RBP7.19□□□□□ -1.26
USP28-207ENST00000538475 NCK2O43639 380 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 MMP20O60882 483 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 ATP2C2O75185 946 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 ITGB2P05107 769 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 CSF1RP07333 972 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 FGRP09769 529 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 RARGP13631 454 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 PDE6AP16499 860 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 CD151P48509 253 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 YARSP54577 528 aaKnown RBP7.19□□□□□ -1.26
USP28-207ENST00000538475 NRLP54845 237 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 KCNJ2P63252 427 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 EHHADHQ08426 723 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 TCEAL1Q15170 157 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 ZNF174Q15697 407 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 CNGA2Q16280 664 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 NAALADL2Q58DX5 795 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 CCDC178Q5BJE1 867 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 PERM1Q5SV97 790 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 TMEM154Q6P9G4 183 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 ARHGEF18Q6ZSZ5 1173 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 CYFIP1Q7L576 1253 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 NELFCDQ8IXH7 590 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 RIBC1Q8N443 379 aaPredicted RBP7.19□□□□□ -1.26
USP28-207ENST00000538475 LRRC57Q8N9N7 239 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 PPFIBP2Q8ND30 876 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 TTC16Q8NEE8 873 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 HELQQ8TDG4 1101 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 MORC4Q8TE76 937 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 GTF3C2Q8WUA4 911 aaPredicted RBP7.19□□□□□ -1.26
USP28-207ENST00000538475 MAGEB18Q96M61 343 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 NSUN5Q96P11 429 aaKnown RBP7.19□□□□□ -1.26
USP28-207ENST00000538475 HAPLN3Q96S86 360 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 TRIM9Q9C026 710 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 MMADHCQ9H3L0 296 aaPredicted RBP7.19□□□□□ -1.26
USP28-207ENST00000538475 MMRN2Q9H8L6 949 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 METTL14Q9HCE5 456 aaKnown RBP7.19□□□□□ -1.26
USP28-207ENST00000538475 ZDHHC18Q9NUE0 388 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 TCP11L1Q9NUJ3 509 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 ABCF3Q9NUQ8 709 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 DDX43Q9NXZ2 648 aaKnown RBP7.19□□□□□ -1.26
USP28-207ENST00000538475 FRRS1LQ9P0K9 344 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 SEC63Q9UGP8 760 aaKnown RBP7.19□□□□□ -1.26
USP28-207ENST00000538475 LNPEPQ9UIQ6 1025 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 SALL4Q9UJQ4 1053 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 PNMA2Q9UL42 364 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 TFR2Q9UP52 801 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 AGAP1Q9UPQ3 857 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 STXBP5LQ9Y2K9 1186 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.19□□□□□ -1.26
USP28-207ENST00000538475 USH1CQ9Y6N9 552 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 PITPNM2Q9BZ72 1349 aa7.19□□□□□ -1.26
USP28-207ENST00000538475 ZSCAN5CA6NGD5 496 aaPredicted RBP7.18□□□□□ -1.26
USP28-207ENST00000538475 RASGRF2O14827 1237 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 NVLO15381 856 aaKnown RBP7.18□□□□□ -1.26
USP28-207ENST00000538475 DAPK3O43293 454 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 STRNO43815 780 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 CEP104O60308 925 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 PEX11AO75192 247 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 ZWINTO95229 277 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 GHRHP01286 108 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 A1BGP04217 495 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 PLEKP08567 350 aaPredicted RBP7.18□□□□□ -1.26
USP28-207ENST00000538475 PIM1P11309 404 aaPredicted RBP7.18□□□□□ -1.26
USP28-207ENST00000538475 SCG2P13521 617 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 IDO1P14902 403 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 PCSK2P16519 638 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 DESP17661 470 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 RXRAP19793 462 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 KLRC1P26715 233 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 CASP1P29466 404 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 CHRNA3P32297 505 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 AFF1P51825 1210 aaKnown RBP7.18□□□□□ -1.26
USP28-207ENST00000538475 PMS1P54277 932 aaKnown RBP7.18□□□□□ -1.26
USP28-207ENST00000538475 RAD23BP54727 409 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 HADHBP55084 474 aaKnown RBP7.18□□□□□ -1.26
USP28-207ENST00000538475 RAC1P63000 192 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 CAV1Q03135 178 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 DEUP1Q05D60 604 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 STRN3Q13033 797 aa7.18□□□□□ -1.26
USP28-207ENST00000538475 ITGA9Q13797 1035 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms