RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SLC5A9Q2M3M2 681 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 RTP2Q5QGT7 225 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 FAM171A1Q5VUB5 890 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 IQCEQ6IPM2 695 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 SRGAP1Q7Z6B7 1085 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 RALYLQ86SE5 291 aaKnown RBP10.26□□□□□ -0.77
USP28-205ENST00000537706 EXOC4Q96A65 974 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 CORO1BQ9BR76 489 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 DSCC1Q9BVC3 393 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 ANO3Q9BYT9 981 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 GLT8D2Q9H1C3 349 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 CLMPQ9H6B4 373 aa10.26□□□□□ -0.77
USP28-205ENST00000537706 EVLQ9UI08 416 aaPredicted RBP10.26□□□□□ -0.77
USP28-205ENST00000537706 EVPLQ92817 2033 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 DPYSL4O14531 572 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 DDAH1O94760 285 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 ERLIN2O94905 339 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 OR1D2P34982 312 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 GRIK3Q13003 919 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 AP3B2Q13367 1082 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 HEATR3Q7Z4Q2 680 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 LEMD2Q8NC56 503 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 LNX1Q8TBB1 728 aaPredicted RBP10.25□□□□□ -0.77
USP28-205ENST00000537706 OTUD7AQ8TE49 926 aaPredicted RBP10.25□□□□□ -0.77
USP28-205ENST00000537706 CCDC51Q96ER9 411 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 TRIM6Q9C030 488 aaPredicted RBP10.25□□□□□ -0.77
USP28-205ENST00000537706 TRPV4Q9HBA0 871 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 C2orf42Q9NWW7 574 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 IPPQ9Y573 584 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 PCDHB9Q9Y5E1 797 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 MTCL1Q9Y4B5 1905 aaKnown RBP10.25□□□□□ -0.77
USP28-205ENST00000537706 GCN1Q92616 2671 aaKnown RBP10.25□□□□□ -0.77
USP28-205ENST00000537706 CCDC194A0A1B0GVG4 234 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 HEPACAM2A8MVW5 462 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 PRRG1O14668 218 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 DHX15O43143 795 aaKnown RBP10.25□□□□□ -0.77
USP28-205ENST00000537706 NTRK1P04629 796 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 AXLP30530 894 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 MAPK8P45983 427 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 GRSF1Q12849 480 aaKnown RBP eCLIP10.25□□□□□ -0.77
USP28-205ENST00000537706 CCINQ13939 588 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 MTERF2Q49AM1 385 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 USP39Q53GS9 565 aaKnown RBP10.25□□□□□ -0.77
USP28-205ENST00000537706 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.25□□□□□ -0.77
USP28-205ENST00000537706 CYB5R4Q7L1T6 521 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 SLITRK6Q9H5Y7 841 aa10.25□□□□□ -0.77
USP28-205ENST00000537706 SEPT9Q9UHD8 586 aaPredicted RBP10.25□□□□□ -0.77
USP28-205ENST00000537706 F8W810 466 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 APBB3O95704 486 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 SREBF1P36956 1147 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 ABCG1P45844 678 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 SOX9P48436 509 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 IRX4P78413 519 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 ARHGAP29Q52LW3 1261 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 PRSS36Q5K4E3 855 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 CCNI2Q6ZMN8 369 aaPredicted RBP10.24□□□□□ -0.77
USP28-205ENST00000537706 PIP4P1Q86T03 277 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 EXOC8Q8IYI6 725 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 ZSCAN18Q8TBC5 510 aaPredicted RBP10.24□□□□□ -0.77
USP28-205ENST00000537706 PIGKQ92643 395 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 RILPL2Q969X0 211 aa10.24□□□□□ -0.77
USP28-205ENST00000537706 C1QL1O75973 258 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 VIPR2P41587 438 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 DHPSP49366 369 aaPredicted RBP10.23□□□□□ -0.77
USP28-205ENST00000537706 ADCY7P51828 1080 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 NAPAP54920 295 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 PCBP1Q15365 356 aaKnown RBP eCLIP10.23□□□□□ -0.77
USP28-205ENST00000537706 MAPK6Q16659 721 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 TRIM61Q5EBN2 209 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 UBXN11Q5T124 520 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 PMS2CLQ68D20 193 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 NOTUMQ6P988 496 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 SCUBE3Q8IX30 993 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 SMG8Q8ND04 991 aaKnown RBP10.23□□□□□ -0.77
USP28-205ENST00000537706 MDM1Q8TC05 714 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 PGBD1Q96JS3 809 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 ZNF512Q96ME7 567 aaPredicted RBP10.23□□□□□ -0.77
USP28-205ENST00000537706 RIC8AQ9NPQ8 531 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 DISC1Q9NRI5 854 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 DIAPH3Q9NSV4 1193 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 ZMYM2Q9UBW7 1377 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 ARHGEF37A1IGU5 675 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 HIP1O00291 1037 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 MEFVO15553 781 aaPredicted RBP10.23□□□□□ -0.77
USP28-205ENST00000537706 OPHN1O60890 802 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 SFNP31947 248 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 JAK3P52333 1124 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 PLCB2Q00722 1185 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 AMPD2Q01433 879 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 KCNC4Q03721 635 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 SEMA3BQ13214 749 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 DRP2Q13474 957 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 XKR3Q5GH77 459 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 PPP1R18Q6NYC8 613 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 ADAMTS14Q8WXS8 1223 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 ACDQ96AP0 544 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 HHIPQ96QV1 700 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 TMEM209Q96SK2 561 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 DKK4Q9UBT3 224 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 APOBEC2Q9Y235 224 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms