RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 ZSCAN31Q96LW9 406 aaPredicted RBP9.32□□□□□ -0.92
USP28-203ENST00000537490 DDX19AQ9NUU7 478 aaKnown RBP9.32□□□□□ -0.92
USP28-203ENST00000537490 FBXW11Q9UKB1 542 aa9.32□□□□□ -0.92
USP28-203ENST00000537490 FBXL21Q9UKT6 434 aa9.32□□□□□ -0.92
USP28-203ENST00000537490 PCDHB6Q9Y5E3 794 aa9.32□□□□□ -0.92
USP28-203ENST00000537490 PP2D1A8MPX8 630 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 PROB1E7EW31 1015 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 E9PMD0 336 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 K7ERI5 159 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 ST18O60284 1047 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 LAMP2P13473 410 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 U2AF2P26368 475 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP28-203ENST00000537490 CDC25AP30304 524 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 EFNA5P52803 228 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 PTGDRQ13258 359 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 PDIA5Q14554 519 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 PSMD5Q16401 504 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 IL17AQ16552 155 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 DCAF4L1Q3SXM0 396 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 GLRA4Q5JXX5 417 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 DCLRE1AQ6PJP8 1040 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 GET4Q7L5D6 327 aaPredicted RBP9.31□□□□□ -0.92
USP28-203ENST00000537490 ASCL5Q7RTU5 278 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 GRASPQ7Z6J2 395 aaPredicted RBP9.31□□□□□ -0.92
USP28-203ENST00000537490 DAW1Q8N136 415 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 CEP120Q8N960 986 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 IGSF22Q8N9C0 903 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 SNX29Q8TEQ0 813 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 KIFAP3Q92845 792 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 PPP1R10Q96QC0 940 aaKnown RBP9.31□□□□□ -0.92
USP28-203ENST00000537490 RPP25Q9BUL9 199 aaKnown RBP9.31□□□□□ -0.92
USP28-203ENST00000537490 SH2B1Q9NRF2 756 aaPredicted RBP9.31□□□□□ -0.92
USP28-203ENST00000537490 WNT16Q9UBV4 365 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 NOL7Q9UMY1 257 aaKnown RBP9.31□□□□□ -0.92
USP28-203ENST00000537490 TNFSF13BQ9Y275 285 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 PLXNA3P51805 1871 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 DENND4AQ7Z401 1863 aa9.31□□□□□ -0.92
USP28-203ENST00000537490 C2orf16Q68DN1 1984 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 CCDC169A6NNP5 214 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 ANHXE9PGG2 379 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 CCL16O15467 120 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 B3GAT3O94766 335 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 C8AP07357 584 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 SRFP11831 508 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 FGFR3P22607 806 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 FSHRP23945 695 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 NBL1P41271 181 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 BRCC3P46736 316 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 NPTX2P47972 431 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 CLCNKBP51801 687 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 PEX3P56589 373 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 ELAVL2Q12926 359 aaKnown RBP9.3□□□□□ -0.92
USP28-203ENST00000537490 MAPK7Q13164 816 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 HTR4Q13639 388 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 RAB33AQ14088 237 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 PPM1LQ5SGD2 360 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 RSPO2Q6UXX9 243 aaPredicted RBP9.3□□□□□ -0.92
USP28-203ENST00000537490 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.3□□□□□ -0.92
USP28-203ENST00000537490 TAS1R3Q7RTX0 852 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 KCNK18Q7Z418 384 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 CCDC105Q8IYK2 499 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 DTWD2Q8NBA8 298 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 C3orf58Q8NDZ4 430 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 GPR152Q8TDT2 470 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 NXPE3Q969Y0 559 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 ACO2Q99798 780 aaKnown RBP9.3□□□□□ -0.92
USP28-203ENST00000537490 RTP3Q9BQQ7 232 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 MMTAG2Q9BU76 263 aaKnown RBP9.3□□□□□ -0.92
USP28-203ENST00000537490 RUSC1Q9BVN2 902 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 CDT1Q9H211 546 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 GOLGA2P5Q9HBQ8 144 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 PTPRHQ9HD43 1115 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.3□□□□□ -0.92
USP28-203ENST00000537490 CA14Q9ULX7 337 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 DNM3Q9UQ16 869 aa9.3□□□□□ -0.92
USP28-203ENST00000537490 TDRD15B5MCY1 1934 aaKnown RBP9.29□□□□□ -0.92
USP28-203ENST00000537490 TRIOO75962 3097 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 SMIM28A0A1B0GU29 152 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 SFI1A8K8P3 1242 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 TMEM189-UBE2V1I3L0A0 370 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 I3L4J1 428 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 STK25O00506 426 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 HIP1RO75146 1068 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 HNRNPA1P09651 372 aaKnown RBP eCLIP9.29□□□□□ -0.92
USP28-203ENST00000537490 TKTP29401 623 aaKnown RBP9.29□□□□□ -0.92
USP28-203ENST00000537490 OR1D2P34982 312 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 GRM5P41594 1212 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 OSTNP61366 133 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 SOX4Q06945 474 aaPredicted RBP9.29□□□□□ -0.92
USP28-203ENST00000537490 UPP1Q16831 310 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 C8orf34Q49A92 452 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 XKR4Q5GH76 650 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 AXDND1Q5T1B0 1012 aaPredicted RBP9.29□□□□□ -0.92
USP28-203ENST00000537490 LIN9Q5TKA1 542 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 KRT79Q5XKE5 535 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 RINT1Q6NUQ1 792 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 PARM1Q6UWI2 310 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 ALKAL1Q6UXT8 129 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 C1orf186Q6ZWK4 172 aa9.29□□□□□ -0.92
USP28-203ENST00000537490 FRMD5Q7Z6J6 570 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms