RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 BRD9Q9H8M2 597 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 RSAD1Q9HA92 442 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 AGO4Q9HCK5 861 aaKnown RBP7.29□□□□□ -1.24
CD44-237ENST00000534082 CHST7Q9NS84 486 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 FNIP2Q9P278 1114 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 PIAS3Q9Y6X2 628 aa7.29□□□□□ -1.24
CD44-237ENST00000534082 LNP1A1A4G5 178 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 ZNF623O75123 536 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 RPP40O75818 363 aaKnown RBP7.28□□□□□ -1.24
CD44-237ENST00000534082 HOXA6P31267 233 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 HOXA9P31269 272 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 CREMQ03060 361 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 LRRC32Q14392 662 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 AMHR2Q16671 573 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 PABPC1LQ4VXU2 614 aaKnown RBP7.28□□□□□ -1.24
CD44-237ENST00000534082 TANGO2Q6ICL3 276 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 RETREG3Q86VR2 466 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 DEFB124Q8NES8 71 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 ELSPBP1Q96BH3 223 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 RRP36Q96EU6 259 aaKnown RBP7.28□□□□□ -1.24
CD44-237ENST00000534082 MCRS1Q96EZ8 462 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 MKNK1Q9BUB5 465 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 GCOM2Q9BZD3 368 aaPredicted RBP7.28□□□□□ -1.24
CD44-237ENST00000534082 KRT23Q9C075 422 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 CHMP4BQ9H444 224 aaKnown RBP7.28□□□□□ -1.24
CD44-237ENST00000534082 DCTPP1Q9H773 170 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 PSTPIP2Q9H939 334 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 LY9Q9HBG7 655 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 RBM12Q9NTZ6 932 aaKnown RBP7.28□□□□□ -1.24
CD44-237ENST00000534082 HCFC1R1Q9NWW0 138 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 C2orf42Q9NWW7 574 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 KANSL3Q9P2N6 904 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 SEC63Q9UGP8 760 aaKnown RBP7.28□□□□□ -1.24
CD44-237ENST00000534082 KCNH3Q9ULD8 1083 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 PCDHGC3Q9UN70 934 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 PCDHA6Q9UN73 950 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 PCDHA8Q9Y5H6 950 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 MTCL1Q9Y4B5 1905 aaKnown RBP7.28□□□□□ -1.24
CD44-237ENST00000534082 DOCK6Q96HP0 2047 aa7.28□□□□□ -1.24
CD44-237ENST00000534082 CNTNAP2Q9UHC6 1331 aa7.27□□□□□ -1.24
CD44-237ENST00000534082 WDR81Q562E7 1941 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 SPAG17Q6Q759 2223 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 CAPNS1P04632 268 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 POU2F2P09086 479 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 CCDC192P0DO97 292 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 FCARP24071 287 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 CCNE1P24864 410 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 FGD1P98174 961 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 C19orf57Q0VDD7 668 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 USP41Q3LFD5 358 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 CEP55Q53EZ4 464 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 FUT10Q6P4F1 479 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 COLGALT2Q8IYK4 626 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 GPR65Q8IYL9 337 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 SLC7A14Q8TBB6 771 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 IRF7Q92985 503 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 FAM167AQ96KS9 214 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 TRMT61BQ9BVS5 477 aaKnown RBP7.27□□□□□ -1.25
CD44-237ENST00000534082 SPZ1Q9BXG8 430 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 CNNM2Q9H8M5 875 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 ZNF334Q9HCZ1 680 aaPredicted RBP7.27□□□□□ -1.25
CD44-237ENST00000534082 TMEM9BQ9NQ34 198 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 IGSF5Q9NSI5 407 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 TOR4AQ9NXH8 423 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 GDE1Q9NZC3 331 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 DACH1Q9UI36 760 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 MRPS23Q9Y3D9 190 aaKnown RBP7.27□□□□□ -1.25
CD44-237ENST00000534082 PCDHB2Q9Y5E7 798 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 MAFBQ9Y5Q3 323 aaPredicted RBP7.27□□□□□ -1.25
CD44-237ENST00000534082 ZNF462Q96JM2 2506 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 TICRRQ7Z2Z1 1910 aa7.27□□□□□ -1.25
CD44-237ENST00000534082 CFAP46Q8IYW2 2715 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 A0A087WZ62 844 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 TRIM66O15016 1216 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 CEBPBP17676 345 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 GDI1P31150 447 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 PXNP49023 591 aaPredicted RBP7.26□□□□□ -1.25
CD44-237ENST00000534082 MFAP1P55081 439 aaKnown RBP7.26□□□□□ -1.25
CD44-237ENST00000534082 DSC1Q08554 894 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 DRP2Q13474 957 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 SLC5A9Q2M3M2 681 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 RTP2Q5QGT7 225 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 PRSS55Q6UWB4 352 aaPredicted RBP7.26□□□□□ -1.25
CD44-237ENST00000534082 CYB5R4Q7L1T6 521 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 CATSPER4Q7RTX7 472 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 MRPL10Q7Z7H8 261 aaKnown RBP7.26□□□□□ -1.25
CD44-237ENST00000534082 MAP4K3Q8IVH8 894 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 PARP9Q8IXQ6 854 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 LRIG1Q96JA1 1093 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 FDXACB1Q9BRP7 624 aaPredicted RBP7.26□□□□□ -1.25
CD44-237ENST00000534082 GPR62Q9BZJ7 368 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 SENP2Q9HC62 589 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 TRPV5Q9NQA5 729 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 AGPAT5Q9NUQ2 364 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 DNMT3BQ9UBC3 853 aaKnown RBP7.26□□□□□ -1.25
CD44-237ENST00000534082 SALL3Q9BXA9 1300 aa7.26□□□□□ -1.25
CD44-237ENST00000534082 MYO18BQ8IUG5 2567 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 MEIS1O00470 390 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 WNT7AO00755 349 aa7.25□□□□□ -1.25
CD44-237ENST00000534082 AKAP3O75969 853 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms