RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 EIF4BP23588 611 aaKnown RBP20.44■□□□□ 0.86
VPS28-207ENST00000526977 MATR3P43243 847 aaKnown RBP eCLIP20.44■□□□□ 0.86
VPS28-207ENST00000526977 CRYBB1P53674 252 aaPredicted RBP20.44■□□□□ 0.86
VPS28-207ENST00000526977 MCCD1P59942 119 aaPredicted RBP20.44■□□□□ 0.86
VPS28-207ENST00000526977 GFPT1Q06210 699 aaPredicted RBP20.44■□□□□ 0.86
VPS28-207ENST00000526977 BFSP1Q12934 665 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 CBWD6Q4V339 395 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 TDRD12Q587J7 1177 aaKnown RBP20.44■□□□□ 0.86
VPS28-207ENST00000526977 CBWD3Q5JTY5 395 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 CBWD5Q5RIA9 395 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 ATF7IP2Q5U623 682 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 IRF2BP2Q7Z5L9 587 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 MSTO1Q9BUK6 570 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 CDC23Q9UJX2 597 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 GINS2Q9Y248 185 aa20.44■□□□□ 0.86
VPS28-207ENST00000526977 RBAK-RBAKDNI3L0D1 243 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 M0QZ92 97 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 ERLIN2O94905 339 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 TRIM49P0CI25 452 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 TRIM49CP0CI26 452 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 HSPA1AP0DMV8 641 aaKnown RBP20.43■□□□□ 0.86
VPS28-207ENST00000526977 HSPA1BP0DMV9 641 aaKnown RBP20.43■□□□□ 0.86
VPS28-207ENST00000526977 DARSP14868 501 aaKnown RBP20.43■□□□□ 0.86
VPS28-207ENST00000526977 MAGEA1P43355 309 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 ARID5AQ03989 594 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 ENPEPQ07075 957 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 TUBB2AQ13885 445 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 ELF2Q15723 593 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 ASIC2Q16515 512 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 AMHR2Q16671 573 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 TMEM132AQ24JP5 1023 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 USP37Q86T82 979 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 SAAL1Q96ER3 474 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 ZBTB45Q96K62 511 aaPredicted RBP20.43■□□□□ 0.86
VPS28-207ENST00000526977 TUBB2BQ9BVA1 445 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 PDCL3Q9H2J4 239 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 PTPRHQ9HD43 1115 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 ANKFY1Q9P2R3 1169 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 MYO6Q9UM54 1294 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 CNTNAP2Q9UHC6 1331 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 A0A0U1RQG5 324 aaPredicted RBP20.43■□□□□ 0.86
VPS28-207ENST00000526977 ZNF233A6NK53 670 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 TTLL13PA6NNM8 815 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 TADA3O75528 432 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 MYCP01106 439 aaPredicted RBP20.43■□□□□ 0.86
VPS28-207ENST00000526977 PROZP22891 400 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 MCL1Q07820 350 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 MPZL3Q6UWV2 235 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 SLC43A3Q8NBI5 491 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 ZSWIM2Q8NEG5 633 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 SPAG5Q96R06 1193 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 OSMRQ99650 979 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 CELF4Q9BZC1 486 aaKnown RBP20.43■□□□□ 0.86
VPS28-207ENST00000526977 TSGA10Q9BZW7 698 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 AJAP1Q9UKB5 411 aaPredicted RBP20.43■□□□□ 0.86
VPS28-207ENST00000526977 NOD1Q9Y239 953 aa20.43■□□□□ 0.86
VPS28-207ENST00000526977 GOLGA8IPA6NC78 632 aa20.42■□□□□ 0.86
VPS28-207ENST00000526977 GOLGA8JA6NMD2 632 aa20.42■□□□□ 0.86
VPS28-207ENST00000526977 CSDE1O75534 798 aaKnown RBP20.42■□□□□ 0.86
VPS28-207ENST00000526977 KLHL30Q0D2K2 578 aa20.42■□□□□ 0.86
VPS28-207ENST00000526977 PTK7Q13308 1070 aa20.42■□□□□ 0.86
VPS28-207ENST00000526977 CBWD2Q8IUF1 395 aa20.42■□□□□ 0.86
VPS28-207ENST00000526977 EHBP1Q8NDI1 1231 aa20.42■□□□□ 0.86
VPS28-207ENST00000526977 ZNF333Q96JL9 665 aa20.42■□□□□ 0.86
VPS28-207ENST00000526977 MFSD14AQ96MC6 490 aa20.42■□□□□ 0.86
VPS28-207ENST00000526977 FAM213AQ9BRX8 229 aa20.42■□□□□ 0.86
VPS28-207ENST00000526977 CDHR5Q9HBB8 845 aa20.42■□□□□ 0.86
VPS28-207ENST00000526977 EFCAB8A8MWE9 144 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 B4GALT5O43286 388 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 VAMP7P51809 220 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 JAM2P57087 298 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 DLG4P78352 724 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 MRPS6P82932 125 aaKnown RBP20.41■□□□□ 0.86
VPS28-207ENST00000526977 IQCEQ6IPM2 695 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 GJB7Q6PEY0 223 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 HAPLN2Q9GZV7 340 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 TRIP12Q14669 1992 aaPredicted RBP20.41■□□□□ 0.86
VPS28-207ENST00000526977 PJA2O43164 708 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 SNX17Q15036 470 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 ARMC5Q96C12 935 aa20.41■□□□□ 0.86
VPS28-207ENST00000526977 A0A1B0GUA9 196 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 MACROD2A1Z1Q3 448 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 ARVCFO00192 962 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 ABLIM1O14639 778 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 OGTO15294 1046 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 TSPAN1O60635 241 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 ARF4P18085 180 aaPredicted RBP20.4■□□□□ 0.86
VPS28-207ENST00000526977 AMPD2Q01433 879 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 ENOX2Q16206 610 aaKnown RBP20.4■□□□□ 0.86
VPS28-207ENST00000526977 CATSPER4Q7RTX7 472 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 TMC2Q8TDI7 906 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 UBXN4Q92575 508 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 FRMPD3Q5JV73 1810 aa20.4■□□□□ 0.86
VPS28-207ENST00000526977 A0A087X0T9 212 aa20.39■□□□□ 0.86
VPS28-207ENST00000526977 FAM228BP0C875 321 aa20.39■□□□□ 0.86
VPS28-207ENST00000526977 AXLP30530 894 aa20.39■□□□□ 0.86
VPS28-207ENST00000526977 SLC18A3Q16572 532 aa20.39■□□□□ 0.86
VPS28-207ENST00000526977 ZNF568Q3ZCX4 644 aa20.39■□□□□ 0.86
VPS28-207ENST00000526977 C1orf220Q5T0J3 134 aa20.39■□□□□ 0.86
VPS28-207ENST00000526977 ZBTB33Q86T24 672 aa20.39■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms