RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 KIAA0319Q5VV43 1072 aa22.58■■□□□ 1.21
VPS28-206ENST00000526734 RRAGBQ5VZM2 374 aa22.58■■□□□ 1.21
VPS28-206ENST00000526734 MYCT1Q8N699 235 aa22.58■■□□□ 1.21
VPS28-206ENST00000526734 LRRC15Q8TF66 581 aa22.58■■□□□ 1.21
VPS28-206ENST00000526734 ACAP3Q96P50 834 aa22.58■■□□□ 1.21
VPS28-206ENST00000526734 PPP1R10Q96QC0 940 aaKnown RBP22.58■■□□□ 1.21
VPS28-206ENST00000526734 ADAM7Q9H2U9 754 aa22.58■■□□□ 1.21
VPS28-206ENST00000526734 K7ENM7 598 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 TRAK2O60296 914 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 PPP6R2O75170 966 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 PIGRP01833 764 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 MTHFRP42898 656 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 MCL1Q07820 350 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 PDXDC1Q6P996 788 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 USP49Q70CQ1 688 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 LINC00301Q8NCQ3 95 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 BICD1Q96G01 975 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 SFXN1Q9H9B4 322 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 FNIP2Q9P278 1114 aa22.57■■□□□ 1.2
VPS28-206ENST00000526734 CASTOR2A6NHX0 329 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 PI4K2BG5E9Z4 385 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 CLDN3O15551 220 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 ZSCAN22P10073 491 aaPredicted RBP22.56■■□□□ 1.2
VPS28-206ENST00000526734 KCNE1P15382 129 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 CLCN4P51793 760 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 SPECC1Q5M775 1068 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 ATL3Q6DD88 541 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 SV2BQ7L1I2 683 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 ZBTB33Q86T24 672 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 CEP120Q8N960 986 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 DDX27Q96GQ7 796 aaKnown RBP22.56■■□□□ 1.2
VPS28-206ENST00000526734 SNX27Q96L92 541 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 FBXL18Q96ME1 805 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 RIPOR3Q96MK2 946 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 CLIC6Q96NY7 704 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 GPR62Q9BZJ7 368 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 ST6GALNAC4Q9H4F1 302 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 ANKFY1Q9P2R3 1169 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 SEL1LQ9UBV2 794 aa22.56■■□□□ 1.2
VPS28-206ENST00000526734 SMIM28A0A1B0GU29 152 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 LOC730098B7Z3J9 87 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 C2CD2LO14523 706 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 SPTLC2O15270 562 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 KIF4AO95239 1232 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 EPCAMP16422 314 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 LIG4P49917 911 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 ALKAL1Q6UXT8 129 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 HDAC7Q8WUI4 952 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 CNTN3Q9P232 1028 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 TBX20Q9UMR3 447 aa22.55■■□□□ 1.2
VPS28-206ENST00000526734 F8W810 466 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 HNRNPDLO14979 420 aaKnown RBP22.54■■□□□ 1.2
VPS28-206ENST00000526734 TEX28O15482 410 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 DCXO43602 365 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 F13A1P00488 732 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 GAP43P17677 238 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 STAT6P42226 847 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 DCLRE1AQ6PJP8 1040 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 TAS1R1Q7RTX1 841 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 HVCN1Q96D96 273 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 PAAF1Q9BRP4 392 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 ZHX3Q9H4I2 956 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 PLEKHA5Q9HAU0 1116 aa22.54■■□□□ 1.2
VPS28-206ENST00000526734 MYH11P35749 1972 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 SPDYE4A6NLX3 237 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 TRAPPC3O43617 180 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 GLUD1P00367 558 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 CLTAP09496 248 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 HARSP12081 509 aaKnown RBP22.53■■□□□ 1.2
VPS28-206ENST00000526734 MATR3P43243 847 aaKnown RBP eCLIP22.53■■□□□ 1.2
VPS28-206ENST00000526734 OSTNP61366 133 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 GTF2BQ00403 316 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 GLRA4Q5JXX5 417 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 CYP26C1Q6V0L0 522 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.53■■□□□ 1.2
VPS28-206ENST00000526734 MAP4K3Q8IVH8 894 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 CMASQ8NFW8 434 aaPredicted RBP22.53■■□□□ 1.2
VPS28-206ENST00000526734 RIN2Q8WYP3 895 aaPredicted RBP22.53■■□□□ 1.2
VPS28-206ENST00000526734 PIK3R5Q8WYR1 880 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 TSPAN18Q96SJ8 248 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 TTPALQ9BTX7 342 aa22.53■■□□□ 1.2
VPS28-206ENST00000526734 CUTAO60888 179 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 B3GAT3O94766 335 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 ATAT1Q5SQI0 421 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 RARS2Q5T160 578 aaKnown RBP22.52■■□□□ 1.2
VPS28-206ENST00000526734 C15orf39Q6ZRI6 1047 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 KCNG4Q8TDN1 519 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 DDX12PQ92771 950 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 ZBTB45Q96K62 511 aaPredicted RBP22.52■■□□□ 1.2
VPS28-206ENST00000526734 FIZ1Q96SL8 496 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 RHOBTB2Q9BYZ6 727 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 LRRC27Q9C0I9 530 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 CXCL16Q9H2A7 254 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 CUEDC2Q9H467 287 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 PLEKHA4Q9H4M7 779 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 EPHX3Q9H6B9 360 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 NR2E1Q9Y466 385 aa22.52■■□□□ 1.2
VPS28-206ENST00000526734 RPL9P32969 192 aaKnown RBP22.51■■□□□ 1.19
VPS28-206ENST00000526734 UPP1Q16831 310 aa22.51■■□□□ 1.19
VPS28-206ENST00000526734 FAM171A1Q5VUB5 890 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms