RNA–Protein interactions for RNA: ENST00000525990.1

SSBP3-210, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-210ENST00000525990 PBXIP1Q96AQ6 731 aa13.25□□□□□ -0.29
SSBP3-210ENST00000525990 PPP1R10Q96QC0 940 aaKnown RBP13.25□□□□□ -0.29
SSBP3-210ENST00000525990 PTPRHQ9HD43 1115 aa13.25□□□□□ -0.29
SSBP3-210ENST00000525990 TNFSF13BQ9Y275 285 aa13.25□□□□□ -0.29
SSBP3-210ENST00000525990 MUC6Q6W4X9 2439 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 WDFY4Q6ZS81 3184 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 SF3B1O75533 1304 aaKnown RBP eCLIP13.24□□□□□ -0.295e-6■■■■■ 94
SSBP3-210ENST00000525990 CCDC195A0A1B0GUA6 201 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 VPS37CA5D8V6 355 aaPredicted RBP13.24□□□□□ -0.29
SSBP3-210ENST00000525990 PLA2G4BP0C869 781 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 MCM2P49736 904 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 CLCNKBP51801 687 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 VCPP55072 806 aaKnown RBP13.24□□□□□ -0.29
SSBP3-210ENST00000525990 DMP1Q13316 513 aaPredicted RBP13.24□□□□□ -0.29
SSBP3-210ENST00000525990 CUL4AQ13619 759 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 DHX8Q14562 1220 aaKnown RBP13.24□□□□□ -0.29
SSBP3-210ENST00000525990 FAM173BQ6P4H8 233 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 LILRA6Q6PI73 481 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 SYT2Q8N9I0 419 aaPredicted RBP13.24□□□□□ -0.29
SSBP3-210ENST00000525990 ST13P5Q8NFI4 369 aaPredicted RBP13.24□□□□□ -0.29
SSBP3-210ENST00000525990 ZNF707Q96C28 371 aaPredicted RBP13.24□□□□□ -0.29
SSBP3-210ENST00000525990 DRC1Q96MC2 740 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 ZMAT2Q96NC0 199 aaKnown RBP13.24□□□□□ -0.29
SSBP3-210ENST00000525990 CLSTN3Q9BQT9 956 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 HAPLN2Q9GZV7 340 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 STK39Q9UEW8 545 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 SORCS3Q9UPU3 1222 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.24□□□□□ -0.29
SSBP3-210ENST00000525990 STK24Q9Y6E0 443 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 COL4A3Q01955 1670 aa13.24□□□□□ -0.29
SSBP3-210ENST00000525990 TSC2P49815 1807 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 PROZP22891 400 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 GUCY2CP25092 1073 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 GRM5P41594 1212 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 BRCC3P46736 316 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 SF3A1Q15459 793 aaKnown RBP13.23□□□□□ -0.29
SSBP3-210ENST00000525990 CCDC149Q6ZUS6 474 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 BMP8AQ7Z5Y6 402 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 TMEM161BQ8NDZ6 487 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 PRSS33Q8NF86 280 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 LNX1Q8TBB1 728 aaPredicted RBP13.23□□□□□ -0.29
SSBP3-210ENST00000525990 C18orf25Q96B23 403 aaPredicted RBP13.23□□□□□ -0.29
SSBP3-210ENST00000525990 CDK5RAP3Q96JB5 506 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 MRPL4Q9BYD3 311 aaKnown RBP13.23□□□□□ -0.29
SSBP3-210ENST00000525990 TMEM134Q9H6X4 195 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 FOXD4L1Q9NU39 408 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 BLOC1S4Q9NUP1 217 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 FNIP2Q9P278 1114 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 ANKFY1Q9P2R3 1169 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 SSX2IPQ9Y2D8 614 aa13.23□□□□□ -0.29
SSBP3-210ENST00000525990 ARIH1Q9Y4X5 557 aaPredicted RBP13.23□□□□□ -0.29
SSBP3-210ENST00000525990 SMIM28A0A1B0GU29 152 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 MAPTP10636 758 aaKnown RBP13.22□□□□□ -0.29
SSBP3-210ENST00000525990 PLS3P13797 630 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 TKTP29401 623 aaKnown RBP13.22□□□□□ -0.29
SSBP3-210ENST00000525990 MTMR3Q13615 1198 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 MCM6Q14566 821 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 KARSQ15046 597 aaKnown RBP13.22□□□□□ -0.29
SSBP3-210ENST00000525990 PSMD5Q16401 504 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 SPECC1Q5M775 1068 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 ARL6IP4Q66PJ3 421 aaKnown RBP13.22□□□□□ -0.29
SSBP3-210ENST00000525990 MPZL3Q6UWV2 235 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 ALKAL1Q6UXT8 129 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 RSPO2Q6UXX9 243 aaPredicted RBP13.22□□□□□ -0.29
SSBP3-210ENST00000525990 C15orf39Q6ZRI6 1047 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 USP49Q70CQ1 688 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 ZDHHC14Q8IZN3 488 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 FBXL6Q8N531 539 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 CMASQ8NFW8 434 aaPredicted RBP13.22□□□□□ -0.29
SSBP3-210ENST00000525990 RSAD2Q8WXG1 361 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 PIK3R5Q8WYR1 880 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 SMG7Q92540 1137 aaKnown RBP13.22□□□□□ -0.29
SSBP3-210ENST00000525990 SNX27Q96L92 541 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 MFSD14AQ96MC6 490 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 MYADMQ96S97 322 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 PHOX2BQ99453 314 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 REEP2Q9BRK0 252 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 TTPALQ9BTX7 342 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 NT5C3AQ9H0P0 336 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 USTQ9Y2C2 406 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 CLIC4Q9Y696 253 aa13.22□□□□□ -0.29
SSBP3-210ENST00000525990 TCHHQ07283 1943 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 CLUHO75153 1309 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 B3GAT3O94766 335 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 PLCG1P19174 1290 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 NTHL1P78549 312 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 NHLH1Q02575 133 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 SPAG1Q07617 926 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 UPP1Q16831 310 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 XKR4Q5GH76 650 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 GPBP1Q86WP2 473 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 SPIRE2Q8WWL2 714 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 DDX27Q96GQ7 796 aaKnown RBP13.21□□□□□ -0.29
SSBP3-210ENST00000525990 NTPCRQ9BSD7 190 aaKnown RBP13.21□□□□□ -0.29
SSBP3-210ENST00000525990 TCHPQ9BT92 498 aa13.21□□□□□ -0.29
SSBP3-210ENST00000525990 CCDC94Q9BW85 323 aaPredicted RBP13.21□□□□□ -0.29
SSBP3-210ENST00000525990 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.21□□□□□ -0.29
SSBP3-210ENST00000525990 ZDBF2Q9HCK1 2354 aa13.21□□□□□ -0.3
SSBP3-210ENST00000525990 TMEM189-UBE2V1I3L0A0 370 aa13.2□□□□□ -0.3
SSBP3-210ENST00000525990 NARSO43776 548 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms