RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 GDF7Q7Z4P5 450 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 LDLRAD3Q86YD5 345 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 AMER2Q8N7J2 671 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 GPATCH3Q96I76 525 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 MRI1Q9BV20 369 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 SLC46A2Q9BY10 475 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 SENP6Q9GZR1 1112 aaPredicted RBP5.46□□□□□ -1.54
CD44-217ENST00000525348 MKS1Q9NXB0 559 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 POGKQ9P215 609 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 ZBTB21Q9ULJ3 1066 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 FZD1Q9UP38 647 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 CLCA2Q9UQC9 943 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 HS3ST4Q9Y661 456 aa5.46□□□□□ -1.54
CD44-217ENST00000525348 CENPVL1A0A0U1RR11 272 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 DRGXA6NNA5 263 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 LPXNO60711 386 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 NCR1O76036 304 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 RECQL4O94761 1208 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 ENDOD1O94919 500 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 RAP2AP10114 183 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 WASP42768 502 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 PER3P56645 1201 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 RAP2BP61225 183 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 MTM1Q13496 603 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 ATXN7L2Q5T6C5 722 aaPredicted RBP5.45□□□□□ -1.54
CD44-217ENST00000525348 RPUSD2Q8IZ73 545 aaKnown RBP5.45□□□□□ -1.54
CD44-217ENST00000525348 HAS1Q92839 578 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 RAB24Q969Q5 203 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 FUBP3Q96I24 572 aaKnown RBP eCLIP5.45□□□□□ -1.54
CD44-217ENST00000525348 TNKSO95271 1327 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 WASHC2CQ9Y4E1 1318 aa5.45□□□□□ -1.54
CD44-217ENST00000525348 CCDC78A2IDD5 438 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 FAM171A2A8MVW0 826 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 ITGB1P05556 798 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 SNRPA1P09661 255 aaKnown RBP5.44□□□□□ -1.54
CD44-217ENST00000525348 IL2RBP14784 551 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 SLC6A2P23975 617 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 PTGS2P35354 604 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 HMGA2P52926 109 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 ATP8B2P98198 1209 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 ACAP2Q15057 778 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 GJC2Q5T442 439 aaPredicted RBP5.44□□□□□ -1.54
CD44-217ENST00000525348 PCSK4Q6UW60 755 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 FAM180AQ6UWF9 173 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 LRRC55Q6ZSA7 311 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 ZFP28Q8NHY6 868 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 CCHCR1Q8TD31 782 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 CASKIN2Q8WXE0 1202 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 TEKT5Q96M29 485 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 DCLRE1CQ96SD1 692 aaKnown RBP5.44□□□□□ -1.54
CD44-217ENST00000525348 ASPSCR1Q9BZE9 553 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 AKIP1Q9NQ31 210 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 FBXO34Q9NWN3 711 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 DKK2Q9UBU2 259 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 INTUQ9ULD6 942 aa5.44□□□□□ -1.54
CD44-217ENST00000525348 RUVBL1Q9Y265 456 aaKnown RBP5.44□□□□□ -1.54
CD44-217ENST00000525348 MARCH11A6NNE9 402 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 XPOTO43592 962 aaKnown RBP5.43□□□□□ -1.54
CD44-217ENST00000525348 GPR32O75388 356 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 PRSS23O95084 383 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 EDNRBP24530 442 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 TARDBPQ13148 414 aaKnown RBP eCLIP5.43□□□□□ -1.54
CD44-217ENST00000525348 ODF1Q14990 250 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 BEAN1Q3B7T3 259 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 AGAP9Q5VTM2 703 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 OTUD7BQ6GQQ9 843 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 SEM1Q6ZVN7 128 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 ULK2Q8IYT8 1036 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 DCBLD1Q8N8Z6 715 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 SSH1Q8WYL5 1049 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 MYEOVQ96EZ4 313 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 PHACTR3Q96KR7 559 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 FAM193BQ96PV7 902 aaPredicted RBP5.43□□□□□ -1.54
CD44-217ENST00000525348 ADAM2Q99965 735 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 IKZF4Q9H2S9 585 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 SERPINB13Q9UIV8 391 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 LIMCH1Q9UPQ0 1083 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 MAP3K2Q9Y2U5 619 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 USP15Q9Y4E8 981 aaPredicted RBP5.43□□□□□ -1.54
CD44-217ENST00000525348 IPPQ9Y573 584 aa5.43□□□□□ -1.54
CD44-217ENST00000525348 SHTN1A0MZ66 631 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 KLHL33A6NCF5 533 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 TMEM200CA6NKL6 621 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 ALG1L2C9J202 215 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 RNASET2O00584 256 aaKnown RBP5.42□□□□□ -1.54
CD44-217ENST00000525348 NDUFA10O95299 355 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 ELANEP08246 267 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 ATP5JP18859 108 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 MGAT1P26572 445 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 DPTQ07507 201 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 C3orf36Q3SXR2 165 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 RRP12Q5JTH9 1297 aaKnown RBP5.42□□□□□ -1.54
CD44-217ENST00000525348 ZNF529Q6P280 563 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 MED25Q71SY5 747 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 UBE3BQ7Z3V4 1068 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 VRK3Q8IV63 474 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 RHOT1Q8IXI2 618 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 PROKR1Q8TCW9 393 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 CHFRQ96EP1 664 aa5.42□□□□□ -1.54
CD44-217ENST00000525348 SMAD5Q99717 465 aaKnown RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms