RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 URODP06132 367 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 HOXB8P17481 243 aaPredicted RBP13.98□□□□□ -0.17
CLCN3-210ENST00000515420 ME1P48163 572 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 LIG4P49917 911 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 DNM1Q05193 864 aaKnown RBP13.98□□□□□ -0.17
CLCN3-210ENST00000515420 DLX2Q07687 328 aaPredicted RBP13.98□□□□□ -0.17
CLCN3-210ENST00000515420 ALCAMQ13740 583 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 HSP90AA2PQ14568 343 aaPredicted RBP13.98□□□□□ -0.17
CLCN3-210ENST00000515420 SHC4Q6S5L8 630 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 DYMQ7RTS9 669 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 PPFIBP1Q86W92 1011 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 PDILTQ8N807 584 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 CEP120Q8N960 986 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 IQUBQ8NA54 791 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 CASP10Q92851 521 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 BICD1Q96G01 975 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 SNX27Q96L92 541 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 UROC1Q96N76 676 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 ZHX3Q9H4I2 956 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 MRPL17Q9NRX2 175 aaKnown RBP13.98□□□□□ -0.17
CLCN3-210ENST00000515420 KBTBD4Q9NVX7 518 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 CNTN3Q9P232 1028 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 ANKFY1Q9P2R3 1169 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 PRKAG3Q9UGI9 489 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 PCDHA7Q9UN72 937 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 ZDHHC9Q9Y397 364 aa13.98□□□□□ -0.17
CLCN3-210ENST00000515420 SF3B1O75533 1304 aaKnown RBP eCLIP13.97□□□□□ -0.179e-6■■■■■ 68.9
CLCN3-210ENST00000515420 SMIM28A0A1B0GU29 152 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 MBTPS2O43462 519 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 LILRB3O75022 631 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 PPP1R37O75864 691 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 C1RP00736 705 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 KCNE1P15382 129 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 GLUD2P49448 558 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 KRT85P78386 507 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 AMPD3Q01432 767 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 DSG1Q02413 1049 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 ELAVL2Q12926 359 aaKnown RBP13.97□□□□□ -0.17
CLCN3-210ENST00000515420 SMAD2Q15796 467 aaKnown RBP13.97□□□□□ -0.17
CLCN3-210ENST00000515420 RESP18Q5W5W9 173 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 FUT10Q6P4F1 479 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 CNNM4Q6P4Q7 775 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 ZNF720Q7Z2F6 126 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 ZBTB33Q86T24 672 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 SFR1Q86XK3 245 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 TMEM87AQ8NBN3 555 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 VN1R2Q8NFZ6 395 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 ZBTB45Q96K62 511 aaPredicted RBP13.97□□□□□ -0.17
CLCN3-210ENST00000515420 TSPAN18Q96SJ8 248 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 STRA6Q9BX79 667 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 EMILIN2Q9BXX0 1053 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 PLEKHA5Q9HAU0 1116 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 CHST7Q9NS84 486 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 FAM13BQ9NYF5 915 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 BARX2Q9UMQ3 279 aaPredicted RBP13.97□□□□□ -0.17
CLCN3-210ENST00000515420 HCFC2Q9Y5Z7 792 aa13.97□□□□□ -0.17
CLCN3-210ENST00000515420 TNFRSF10AO00220 468 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 CLASP2O75122 1294 aaKnown RBP13.96□□□□□ -0.17
CLCN3-210ENST00000515420 CLTAP09496 248 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 IL9P15248 144 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 KCNA4P22459 653 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 NMT1P30419 496 aaKnown RBP13.96□□□□□ -0.17
CLCN3-210ENST00000515420 CREMQ03060 361 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 USP41Q3LFD5 358 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 FOXD4L6Q3SYB3 417 aaPredicted RBP13.96□□□□□ -0.17
CLCN3-210ENST00000515420 SLFN12LQ6IEE8 588 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 ANKRD54Q6NXT1 300 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 FOXD4L3Q6VB84 417 aaPredicted RBP13.96□□□□□ -0.17
CLCN3-210ENST00000515420 DDX27Q96GQ7 796 aaKnown RBP13.96□□□□□ -0.17
CLCN3-210ENST00000515420 PANK2Q9BZ23 570 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.96□□□□□ -0.17
CLCN3-210ENST00000515420 DZANK1Q9NVP4 752 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 STYXL1Q9Y6J8 313 aa13.96□□□□□ -0.17
CLCN3-210ENST00000515420 A0A0B4J269 797 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 CASTOR2A6NHX0 329 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 OGTO15294 1046 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 FAM189A1O60320 539 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 TADA2AO75478 443 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 CA8P35219 290 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 MATR3P43243 847 aaKnown RBP eCLIP13.95□□□□□ -0.18
CLCN3-210ENST00000515420 OSTNP61366 133 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 POU5F1Q01860 360 aaKnown RBP13.95□□□□□ -0.18
CLCN3-210ENST00000515420 TPRNQ4KMQ1 711 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 GLRA4Q5JXX5 417 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 KIAA0319Q5VV43 1072 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 ADALQ6DHV7 355 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 PDXDC1Q6P996 788 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 DCLRE1AQ6PJP8 1040 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 CCDC65Q8IXS2 484 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 AUTS2Q8WXX7 1259 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 POP1Q99575 1024 aaKnown RBP13.95□□□□□ -0.18
CLCN3-210ENST00000515420 PAAF1Q9BRP4 392 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 GPR62Q9BZJ7 368 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 TRIM9Q9C026 710 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 HAPLN2Q9GZV7 340 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 SCAND2PQ9GZW5 306 aaPredicted RBP13.95□□□□□ -0.18
CLCN3-210ENST00000515420 CXCL16Q9H2A7 254 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 MRPL44Q9H9J2 332 aaKnown RBP13.95□□□□□ -0.18
CLCN3-210ENST00000515420 RXFP1Q9HBX9 757 aa13.95□□□□□ -0.18
CLCN3-210ENST00000515420 PANK4Q9NVE7 773 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms