RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SPATA21Q7Z572 469 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 ABI1Q8IZP0 508 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 SLC10A4Q96EP9 437 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 TTC1Q99614 292 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 ANKZF1Q9H8Y5 726 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 PSD3Q9NYI0 1048 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 SPECC1L-ADORA2AF8WAN1 911 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 MYBL1P10243 752 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 MX2P20592 715 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 PON1P27169 355 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 NCOA4Q13772 614 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 PAPD7Q5XG87 772 aaKnown RBP13.43□□□□□ -0.26
USP53-209ENST00000514665 BZW1Q7L1Q6 419 aaKnown RBP13.43□□□□□ -0.26
USP53-209ENST00000514665 RBBP8NLQ8NC74 664 aaPredicted RBP13.43□□□□□ -0.26
USP53-209ENST00000514665 RUBCNQ92622 972 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 MTMR8Q96EF0 704 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 CYFIP2Q96F07 1278 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 CALR3Q96L12 384 aaKnown RBP13.43□□□□□ -0.26
USP53-209ENST00000514665 GPRC5CQ9NQ84 441 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 IL17RBQ9NRM6 502 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 APOBEC2Q9Y235 224 aaKnown RBP13.43□□□□□ -0.26
USP53-209ENST00000514665 ZSCAN5CA6NGD5 496 aaPredicted RBP13.43□□□□□ -0.26
USP53-209ENST00000514665 ENTPD3O75355 529 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 BMP6P22004 513 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 EIF3EP60228 445 aaKnown RBP13.43□□□□□ -0.26
USP53-209ENST00000514665 STAT4Q14765 748 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 XKR3Q5GH77 459 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 NUDCD3Q8IVD9 361 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 RNF139Q8WU17 664 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 C18orf8Q96DM3 657 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 SEC16BQ96JE7 1060 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 MKNK1Q9BUB5 465 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 TOPORSQ9NS56 1045 aaPredicted RBP13.43□□□□□ -0.26
USP53-209ENST00000514665 EPS15L1Q9UBC2 864 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 POLLQ9UGP5 575 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.43□□□□□ -0.26
USP53-209ENST00000514665 CDR2Q01850 454 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 TSTA3Q13630 321 aaPredicted RBP13.42□□□□□ -0.26
USP53-209ENST00000514665 TWF2Q6IBS0 349 aaKnown RBP13.42□□□□□ -0.26
USP53-209ENST00000514665 RSPH3Q86UC2 560 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 KIAA0895Q8NCT3 520 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 SYN2Q92777 582 aaPredicted RBP13.42□□□□□ -0.26
USP53-209ENST00000514665 FGFR1OP2Q9NVK5 253 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 SUCLA2Q9P2R7 463 aaPredicted RBP13.42□□□□□ -0.26
USP53-209ENST00000514665 DIAPH2O60879 1101 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 AKAP3O75969 853 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 HLA-DRAP01903 254 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 ADORA2BP29275 332 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 ROR1Q01973 937 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 FIGNQ5HY92 759 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 HEATR6Q6AI08 1181 aaKnown RBP13.42□□□□□ -0.26
USP53-209ENST00000514665 CCNYL1Q8N7R7 359 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 AGR3Q8TD06 166 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 SCFD1Q8WVM8 642 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 BTBD6Q96KE9 485 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 FAM161BQ96MY7 647 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 SPATA33Q96N06 139 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 MXRA8Q9BRK3 442 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 TARS2Q9BW92 718 aaKnown RBP13.42□□□□□ -0.26
USP53-209ENST00000514665 CYP4F11Q9HBI6 524 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 SPATS2LQ9NUQ6 558 aaKnown RBP13.42□□□□□ -0.26
USP53-209ENST00000514665 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP53-209ENST00000514665 TMEM120BA0PK00 339 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 RGS7P49802 495 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 OCRLQ01968 901 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 CDR2LQ86X02 465 aaPredicted RBP13.42□□□□□ -0.26
USP53-209ENST00000514665 IL17RAQ96F46 866 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 ATXN7L3BQ96GX2 97 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 NUDT12Q9BQG2 462 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 CARD9Q9H257 536 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 OSGEPQ9NPF4 335 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 CYP26B1Q9NR63 512 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 CPSF3Q9UKF6 684 aaKnown RBP13.42□□□□□ -0.26
USP53-209ENST00000514665 ADGRB2O60241 1585 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 MROH2AA6NES4 1674 aa13.42□□□□□ -0.26
USP53-209ENST00000514665 HUS1O60921 280 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 GRAP2O75791 330 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 TTC4O95801 387 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 APRTP07741 180 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 TAL1P17542 331 aaPredicted RBP13.41□□□□□ -0.26
USP53-209ENST00000514665 ARL13BQ3SXY8 428 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 C1orf146Q5VVC0 180 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 LRIG3Q6UXM1 1119 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 BARGINQ6ZT62 677 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 BBS5Q8N3I7 341 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 CCDC124Q96CT7 223 aaKnown RBP13.41□□□□□ -0.26
USP53-209ENST00000514665 MCEEQ96PE7 176 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 TEX13BQ9BXU2 312 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 STOML1Q9UBI4 398 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 ZNF70Q9UC06 446 aaPredicted RBP13.41□□□□□ -0.26
USP53-209ENST00000514665 ANGPTL2Q9UKU9 493 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 PCDHB2Q9Y5E7 798 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 A0A0U1RQJ8 604 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 A8MXQ7 604 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 PFDN6O15212 129 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 ATP5HO75947 161 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 ITIH2P19823 946 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 SLC1A1P43005 524 aa13.41□□□□□ -0.26
USP53-209ENST00000514665 SESN2P58004 480 aaPredicted RBP13.41□□□□□ -0.26
USP53-209ENST00000514665 IL1RL1Q01638 556 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms