RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 LRRC36Q1X8D7 754 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 ZMYM1Q5SVZ6 1142 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 RASGRP2Q7LDG7 609 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 CCDC36Q8IYA8 594 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 ELOA2Q8IYF1 753 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 ENKURQ8TC29 256 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 RMND5BQ96G75 393 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 MLPHQ9BV36 600 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 A0A087WXM4 84 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 LRRC53A6NM62 1247 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 E5RI56 91 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 SRGAP2O75044 1071 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 PLA2G4BP0C869 781 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 SPRP35270 261 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 SPANXN2Q5MJ10 180 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 PRR23BQ6ZRT6 265 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 MYCBPAPQ8TBZ2 947 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 ARL8AQ96BM9 186 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 TMA16Q96EY4 203 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 B3GALT6Q96L58 329 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 ANO3Q9BYT9 981 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 UBXN6Q9BZV1 441 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 SLC13A1Q9BZW2 595 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 FHDC1Q9C0D6 1143 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 CD248Q9HCU0 757 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 MLXIPLQ9NP71 852 aa11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 KRCC1Q9NPI7 259 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-217ENST00000512946 PLA2G4AP47712 749 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 ANXA11P50995 505 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 PUDPQ08623 228 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 TNFAIP1Q13829 316 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 ARHGAP27Q6ZUM4 889 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 RCOR2Q8IZ40 523 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 RAB42Q8N4Z0 105 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 METTL13Q8N6R0 699 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 FAM162AQ96A26 154 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 IFT43Q96FT9 208 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 SUCLG2Q96I99 432 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 RNPC3Q96LT9 517 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 PAIP1Q9H074 479 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 TLR7Q9NYK1 1049 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 CCDC195A0A1B0GUA6 201 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 TESPA1A2RU30 521 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 PSMD14O00487 310 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 RXRGP48443 463 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 RGS21Q2M5E4 152 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 LRRC31Q6UY01 552 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 ZFP42Q96MM3 310 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 RNPEPQ9H4A4 650 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 ERAP1Q9NZ08 941 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 WDR19Q8NEZ3 1342 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 PCDH11YQ9BZA8 1340 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 NPATQ14207 1427 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 SYNJ2BP-COX16A0A087WUM0 186 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 POTEFA5A3E0 1075 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 FOXO3O43524 673 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 PTPN4P29074 926 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 RAB15P59190 212 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 KRT17Q04695 432 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 CHRNB3Q05901 458 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 TRIM25Q14258 630 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 P3H1Q32P28 736 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 FAM47CQ5HY64 1035 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 B3GNT6Q6ZMB0 384 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 SCUBE1Q8IWY4 988 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 GUF1Q8N442 669 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 SETD9Q8NE22 299 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 ASAP3Q8TDY4 903 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 SH3TC2Q8TF17 1288 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 ASZ1Q8WWH4 475 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 E2F7Q96AV8 911 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 PPP1R14BQ96C90 147 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 MANSC1Q9H8J5 431 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 PLGRKTQ9HBL7 147 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 NGRNQ9NPE2 291 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 COX16Q9P0S2 106 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 ZNF219Q9P2Y4 722 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 C15orf41Q9Y2V0 281 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 PCDHA1Q9Y5I3 950 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 TMEM120BA0PK00 339 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 SRRM3A6NNA2 597 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 UFL1O94874 794 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 SDC4P31431 198 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 PEX5P50542 639 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 ZNF200P98182 395 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 SLC39A6Q13433 755 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 OASLQ15646 514 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 ZNF667Q5HYK9 610 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 MZT2BQ6NZ67 158 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 HEATR4Q86WZ0 1026 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 CPXCR1Q8N123 301 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 CCDC126Q96EE4 140 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 EGFL8Q99944 293 aa11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 MMTAG2Q9BU76 263 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 C6orf203Q9P0P8 240 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-217ENST00000512946 TPD52L2O43399 206 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-217ENST00000512946 BAIAP3O94812 1187 aa11.78□□□□□ -0.52
LIMCH1-217ENST00000512946 ARIH2O95376 493 aa11.78□□□□□ -0.52
LIMCH1-217ENST00000512946 NSUN2Q08J23 767 aaKnown RBP eCLIP11.78□□□□□ -0.52
LIMCH1-217ENST00000512946 SLC10A5Q5PT55 438 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms