RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MTMR2Q13614 643 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 TMEM132AQ24JP5 1023 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 FAAH2Q6GMR7 532 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 DTHD1Q6ZMT9 781 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 ZNF571Q7Z3V5 609 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 ZNF654Q8IZM8 581 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 THTPAQ9BU02 230 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 C15orf38-AP3S2A0A0A6YYH1 394 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 ARHGAP10A1A4S6 786 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 B2RBV5 119 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 ATMINO43313 823 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 EDF1O60869 148 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 CETPP11597 493 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 ABCB4P21439 1286 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 PLEKHG4Q58EX7 1191 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 UNC13DQ70J99 1090 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 OTOAQ7RTW8 1153 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 ARPINQ7Z6K5 226 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 HIPK4Q8NE63 616 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 RAB3IL1Q8TBN0 382 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 PYDC1Q8WXC3 89 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 METTL22Q9BUU2 404 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 TMOD2Q9NZR1 351 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 ARMCX1Q9P291 453 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 PARP2Q9UGN5 583 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 APPL1Q9UKG1 709 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 FLT4P35916 1363 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 FUOMA2VDF0 154 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 THAP12O43422 761 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 OCM2P0CE71 109 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 OCMP0CE72 109 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 TKTP29401 623 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 HOXA10P31260 410 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 CD300CQ08708 224 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 TGFBIQ15582 683 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 CTC1Q2NKJ3 1217 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 FYB2Q5VWT5 728 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 C4orf33Q8N1A6 199 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 ANKRD35Q8N283 1001 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 KIAA0895Q8NCT3 520 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 COX4I2Q96KJ9 171 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 POP1Q99575 1024 aaKnown RBP12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 GBA3Q9H227 469 aa12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 CLTCQ00610 1675 aaKnown RBP12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 H3BRJ5 948 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 TOM1O60784 492 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 ZBED1O96006 694 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 H2AFZP0C0S5 128 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 ZBTB48P10074 688 aaPredicted RBP12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 LONP1P36776 959 aaKnown RBP12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 VCPP55072 806 aaKnown RBP12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 PLCB3Q01970 1234 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 DHX34Q14147 1143 aaKnown RBP12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 SPARCL1Q14515 664 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 GRAMD1BQ3KR37 738 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 PACS1Q6VY07 963 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 RGS9BPQ6ZS82 235 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 MFSD6Q6ZSS7 791 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 H2AFVQ71UI9 128 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 DYMQ7RTS9 669 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 RFWD2Q8NHY2 731 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 GCNAQ96QF7 691 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 CEP44Q9C0F1 390 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 EMILIN3Q9NT22 766 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 NAGPAQ9UK23 515 aa12.77□□□□□ -0.36
LIMCH1-213ENST00000511496 UNCXA6NJT0 531 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 A8MXQ7 604 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 HNRNPCL1O60812 293 aaKnown RBP12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 TRPA1O75762 1119 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 PIK3CAP42336 1068 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 CTTNQ14247 550 aaKnown RBP12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 BCL2A1Q16548 175 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 DCAF12L1Q5VU92 463 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 NEPROQ6NW34 567 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 CCDC137Q6PK04 289 aaKnown RBP12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 NLRP10Q86W26 655 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 PDSS2Q86YH6 399 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 SYCE1Q8N0S2 351 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 SAMD3Q8N6K7 520 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 LRRC15Q8TF66 581 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 PWWP2AQ96N64 755 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 CCDC85AQ96PX6 553 aaPredicted RBP12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 ASAP1Q9ULH1 1129 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 PRR36Q9H6K5 1346 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 USP31Q70CQ4 1352 aa12.77□□□□□ -0.37
LIMCH1-213ENST00000511496 KLRF2D3W0D1 207 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 ACTN1P12814 892 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 PHBP35232 272 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 RCVRNP35243 200 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 NSUN2Q08J23 767 aaKnown RBP eCLIP12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 ATP1A4Q13733 1029 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 TXNRD1Q16881 649 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 GSDMBQ8TAX9 411 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 USP6NLQ92738 828 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 TRIM9Q9C026 710 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 ALG13Q9NP73 1137 aaKnown RBP12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 SERPINA10Q9UK55 444 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 FBXO9Q9UK97 447 aaPredicted RBP12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 C2orf71A6NGG8 1288 aa12.76□□□□□ -0.37
LIMCH1-213ENST00000511496 TRIM64CA6NLI5 447 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms