RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 ZNF318Q5VUA4 2279 aa16.92■□□□□ 0.3
TPM3-219ENST00000509409 ZDBF2Q9HCK1 2354 aa16.92■□□□□ 0.3
TPM3-219ENST00000509409 PIEZO1Q92508 2521 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 H0Y858 1186 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 H3BQV1 296 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 STK25O00506 426 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 N4BP1O75113 896 aaKnown RBP16.91■□□□□ 0.3
TPM3-219ENST00000509409 HIP1RO75146 1068 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 NPTX2P47972 431 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 DMP1Q13316 513 aaPredicted RBP16.91■□□□□ 0.3
TPM3-219ENST00000509409 GLRA4Q5JXX5 417 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 PDXDC1Q6P996 788 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 LNX1Q8TBB1 728 aaPredicted RBP16.91■□□□□ 0.3
TPM3-219ENST00000509409 MYADMQ96S97 322 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 CLSTN3Q9BQT9 956 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 TCHPQ9BT92 498 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 CCDC94Q9BW85 323 aaPredicted RBP16.91■□□□□ 0.3
TPM3-219ENST00000509409 KMT5AQ9NQR1 393 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 TNFSF13BQ9Y275 285 aa16.91■□□□□ 0.3
TPM3-219ENST00000509409 GALR2O43603 387 aaPredicted RBP16.9■□□□□ 0.3
TPM3-219ENST00000509409 ZMYND10O75800 440 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 B3GAT3O94766 335 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 PRPHP41219 470 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 OSTNP61366 133 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 NAB2Q15742 525 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 IL17AQ16552 155 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 PPM1LQ5SGD2 360 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 LIN9Q5TKA1 542 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 RINT1Q6NUQ1 792 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 DCLRE1AQ6PJP8 1040 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 GET4Q7L5D6 327 aaPredicted RBP16.9■□□□□ 0.3
TPM3-219ENST00000509409 TMEM105Q8N8V8 129 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 RSAD2Q8WXG1 361 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 PIK3R5Q8WYR1 880 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 DRC1Q96MC2 740 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 ACO2Q99798 780 aaKnown RBP16.9■□□□□ 0.3
TPM3-219ENST00000509409 MRPL4Q9BYD3 311 aaKnown RBP16.9■□□□□ 0.3
TPM3-219ENST00000509409 TMEM134Q9H6X4 195 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.9■□□□□ 0.3
TPM3-219ENST00000509409 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.9■□□□□ 0.33e-12■■■□□ 15.6
TPM3-219ENST00000509409 EPS15L1Q9UBC2 864 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 DUSP12Q9UNI6 340 aa16.9■□□□□ 0.3
TPM3-219ENST00000509409 RBM19Q9Y4C8 960 aaKnown RBP16.9■□□□□ 0.3
TPM3-219ENST00000509409 SFI1A8K8P3 1242 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 NARSO43776 548 aaKnown RBP16.89■□□□□ 0.29
TPM3-219ENST00000509409 RFX1P22670 979 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 CLCN5P51795 746 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 CLCNKBP51801 687 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 ZNF568Q3ZCX4 644 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 RILPL1Q5EBL4 403 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.89■□□□□ 0.29
TPM3-219ENST00000509409 SIX5Q8N196 739 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 UROC1Q96N76 676 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 PLIN2Q99541 437 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 RUSC1Q9BVN2 902 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 TARS2Q9BW92 718 aaKnown RBP16.89■□□□□ 0.29
TPM3-219ENST00000509409 UPF2Q9HAU5 1272 aaKnown RBP16.89■□□□□ 0.29
TPM3-219ENST00000509409 TOPORSQ9NS56 1045 aaPredicted RBP16.89■□□□□ 0.29
TPM3-219ENST00000509409 POLIQ9UNA4 740 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 PHLPP2Q6ZVD8 1323 aa16.89■□□□□ 0.29
TPM3-219ENST00000509409 SMIM28A0A1B0GU29 152 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 SLC16A4O15374 487 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 TRAPPC3O43617 180 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 CFHP08603 1231 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 HARSP12081 509 aaKnown RBP16.88■□□□□ 0.29
TPM3-219ENST00000509409 FSHRP23945 695 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 GJB2P29033 226 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 OR1D2P34982 312 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 GRM5P41594 1212 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 RAD51AP2Q09MP3 1159 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 C1orf186Q6ZWK4 172 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 GRASPQ7Z6J2 395 aaPredicted RBP16.88■□□□□ 0.29
TPM3-219ENST00000509409 DAW1Q8N136 415 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 SLC44A3Q8N4M1 653 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 NXPE3Q969Y0 559 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 CDK5RAP3Q96JB5 506 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 TMX3Q96JJ7 454 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 ACAP3Q96P50 834 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 PPP1R10Q96QC0 940 aaKnown RBP16.88■□□□□ 0.29
TPM3-219ENST00000509409 MMTAG2Q9BU76 263 aaKnown RBP16.88■□□□□ 0.29
TPM3-219ENST00000509409 CDT1Q9H211 546 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 GOLGA2P5Q9HBQ8 144 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 FBXW11Q9UKB1 542 aa16.88■□□□□ 0.29
TPM3-219ENST00000509409 TDRD15B5MCY1 1934 aaKnown RBP16.88■□□□□ 0.29
TPM3-219ENST00000509409 VWA3AA6NCI4 1184 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 CCL16O15467 120 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 ADAM12O43184 909 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 XYLBO75191 536 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 C8AP07357 584 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 HNRNPA1P09651 372 aaKnown RBP eCLIP16.87■□□□□ 0.29
TPM3-219ENST00000509409 LAMP2P13473 410 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 IGFBP6P24592 240 aaPredicted RBP16.87■□□□□ 0.29
TPM3-219ENST00000509409 SMTNP53814 917 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 STRN3Q13033 797 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 KCNK18Q7Z418 384 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 CEP120Q8N960 986 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 TIPINQ9BVW5 301 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 C17orf75Q9HAS0 396 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 ARHGAP28Q9P2N2 729 aa16.87■□□□□ 0.29
TPM3-219ENST00000509409 KCNG1Q9UIX4 513 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms