RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 EFNA5P52803 228 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 PSMD5Q16401 504 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 GLRA4Q5JXX5 417 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 NT5DC1Q5TFE4 455 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 ATF7IP2Q5U623 682 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 SIX5Q8N196 739 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 PIK3R5Q8WYR1 880 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 PCDHB6Q9Y5E3 794 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 PHLPP2Q6ZVD8 1323 aa12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 PP2D1A8MPX8 630 aa12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 CFHP08603 1231 aa12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 U2AF2P26368 475 aaKnown RBP eCLIP12.7□□□□□ -0.381e-12■■□□□ 12.4
HMGCS1-204ENST00000507293 ELAVL2Q12926 359 aaKnown RBP12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 PTGDRQ13258 359 aa12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 LIN9Q5TKA1 542 aa12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 IGSF22Q8N9C0 903 aa12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 LNX1Q8TBB1 728 aaPredicted RBP12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 CLSTN3Q9BQT9 956 aa12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 RAB34Q9BZG1 259 aa12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 CACNA1HO95180 2353 aa12.7□□□□□ -0.38
HMGCS1-204ENST00000507293 NOTCH4Q99466 2003 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 CCDC169A6NNP5 214 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 E9PMD0 336 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 K7ERI5 159 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 ADAM12O43184 909 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 PI15O43692 258 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 ST18O60284 1047 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 HIP1RO75146 1068 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 C8AP07357 584 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 AOC1P19801 751 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 FSHRP23945 695 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 IGFBP6P24592 240 aaPredicted RBP12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 PEX3P56589 373 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 PDIA5Q14554 519 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 PPM1LQ5SGD2 360 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 KRT79Q5XKE5 535 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 APBB1IPQ7Z5R6 666 aaPredicted RBP12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 SLC44A3Q8N4M1 653 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 CEP120Q8N960 986 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 PPP1R10Q96QC0 940 aaKnown RBP12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 CDT1Q9H211 546 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 GOLGA2P5Q9HBQ8 144 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 TNFSF13BQ9Y275 285 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 STK24Q9Y6E0 443 aa12.69□□□□□ -0.38
HMGCS1-204ENST00000507293 MIA3Q5JRA6 1907 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 KRBA1A5PL33 1030 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 TMEM189-UBE2V1I3L0A0 370 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 CCL16O15467 120 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 B3GAT3O94766 335 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 HNRNPA1P09651 372 aaKnown RBP eCLIP12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 SRFP11831 508 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 LAMP2P13473 410 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 FGFR3P22607 806 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 CDC25AP30304 524 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 GRM5P41594 1212 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 NPTX2P47972 431 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 CLCNKBP51801 687 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 OSTNP61366 133 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 NTHL1P78549 312 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 IL17AQ16552 155 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 ZNF568Q3ZCX4 644 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 C8orf34Q49A92 452 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 PDXDC1Q6P996 788 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 KCNK18Q7Z418 384 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 GRASPQ7Z6J2 395 aaPredicted RBP12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 DAW1Q8N136 415 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 ST13P5Q8NFI4 369 aaPredicted RBP12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 NXPE3Q969Y0 559 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 UROC1Q96N76 676 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 RUSC1Q9BVN2 902 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 CCDC94Q9BW85 323 aaPredicted RBP12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 WNT16Q9UBV4 365 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 CA14Q9ULX7 337 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 DNM3Q9UQ16 869 aa12.68□□□□□ -0.38
HMGCS1-204ENST00000507293 PROB1E7EW31 1015 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 ANHXE9PGG2 379 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 I3L4J1 428 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 STK25O00506 426 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 LAD1O00515 517 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 RFX1P22670 979 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 TKTP29401 623 aaKnown RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 HOXA9P31269 272 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 PRPHP41219 470 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 NBL1P41271 181 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 YARSP54577 528 aaKnown RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 SOX4Q06945 474 aaPredicted RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 MAPK7Q13164 816 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 DMP1Q13316 513 aaPredicted RBP12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 HTR4Q13639 388 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 RAB33AQ14088 237 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 RINT1Q6NUQ1 792 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 DCLRE1AQ6PJP8 1040 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 CD300LGQ6UXG3 332 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 DTHD1Q6ZMT9 781 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 TAS1R3Q7RTX0 852 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 CCDC105Q8IYK2 499 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 C3orf58Q8NDZ4 430 aa12.67□□□□□ -0.38
HMGCS1-204ENST00000507293 SLC7A14Q8TBB6 771 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms