RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 CDK5RAP3Q96JB5 506 aa19.76■□□□□ 0.75
SQSTM1-209ENST00000504627 DRC1Q96MC2 740 aa19.76■□□□□ 0.75
SQSTM1-209ENST00000504627 CLIC6Q96NY7 704 aa19.76■□□□□ 0.75
SQSTM1-209ENST00000504627 GOLPH3LQ9H4A5 285 aa19.76■□□□□ 0.75
SQSTM1-209ENST00000504627 FAM13BQ9NYF5 915 aa19.76■□□□□ 0.75
SQSTM1-209ENST00000504627 DPP7Q9UHL4 492 aa19.76■□□□□ 0.75
SQSTM1-209ENST00000504627 GDAQ9Y2T3 454 aa19.76■□□□□ 0.75
SQSTM1-209ENST00000504627 TEX28O15482 410 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 EDN1P05305 212 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 PFKFB1P16118 471 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 DSG1Q02413 1049 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 HSP90AA2PQ14568 343 aaPredicted RBP19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 PTPN21Q16825 1174 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 KIAA0319Q5VV43 1072 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 EEF1DP3Q658K8 133 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 RINT1Q6NUQ1 792 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 RNF168Q8IYW5 571 aaPredicted RBP19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 MMTAG2Q9BU76 263 aaKnown RBP19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 GPR62Q9BZJ7 368 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 NT5C3AQ9H0P0 336 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 KMT5AQ9NQR1 393 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 HPSEQ9Y251 543 aa19.75■□□□□ 0.75
SQSTM1-209ENST00000504627 TRIOO75962 3097 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 TMEM221A6NGB7 291 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 CASTOR2A6NHX0 329 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 C2CD4DB7Z1M9 353 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 M0R296 226 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 GLUD1P00367 558 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 NPTX2P47972 431 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 NT5DC1Q5TFE4 455 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 TDRD5Q8NAT2 981 aaKnown RBP19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 PBXIP1Q96AQ6 731 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 B3GALT6Q96L58 329 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 PLIN2Q99541 437 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 RUSC1Q9BVN2 902 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 RXFP1Q9HBX9 757 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 MAN1C1Q9NR34 630 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 CHST7Q9NS84 486 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 CACNG4Q9UBN1 327 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 SF3B1O75533 1304 aaKnown RBP eCLIP19.74■□□□□ 0.758e-6■■□□□ 12.1
SQSTM1-209ENST00000504627 PHLPP2Q6ZVD8 1323 aa19.74■□□□□ 0.75
SQSTM1-209ENST00000504627 PTGESO14684 152 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 EFEMP2O95967 443 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 MYBP10242 640 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 TXLNAP40222 546 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 SIGLEC14Q08ET2 396 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 CAVIN1Q6NZI2 390 aaKnown RBP19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 C1orf186Q6ZWK4 172 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 KCNK18Q7Z418 384 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 GPR149Q86SP6 731 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 ENGASEQ8NFI3 743 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 HASPINQ8TF76 798 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 RIN2Q8WYP3 895 aaPredicted RBP19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 PAAF1Q9BRP4 392 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 PYM1Q9BRP8 204 aaKnown RBP19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 ANP32EQ9BTT0 268 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 TIPINQ9BVW5 301 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 MRPL4Q9BYD3 311 aaKnown RBP19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 C17orf75Q9HAS0 396 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 TNFSF13BQ9Y275 285 aa19.73■□□□□ 0.75
SQSTM1-209ENST00000504627 A0A1B0GVL5 298 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 KINO60870 393 aaKnown RBP19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 SYKP43405 635 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 NDUFA8P51970 172 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 CREMQ03060 361 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 RAD51AP2Q09MP3 1159 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 CCDC183Q5T5S1 534 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 C15orf39Q6ZRI6 1047 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 CCDC149Q6ZUS6 474 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 PALB2Q86YC2 1186 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 GLYCTKQ8IVS8 523 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 FMR1NBQ8N0W7 255 aaPredicted RBP19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 DAW1Q8N136 415 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 PLCD3Q8N3E9 789 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 KCTD17Q8N5Z5 321 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 ACSF2Q96CM8 615 aaPredicted RBP19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 TCHPQ9BT92 498 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 TMEM134Q9H6X4 195 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 KCNG1Q9UIX4 513 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 USTQ9Y2C2 406 aa19.72■□□□□ 0.75
SQSTM1-209ENST00000504627 TECTAO75443 2155 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 SFI1A8K8P3 1242 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 KIF4AO95239 1232 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 GUCY2CP25092 1073 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 SMTNP53814 917 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 YARSP54577 528 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 SNW1Q13573 536 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 MTMR3Q13615 1198 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 ZNF568Q3ZCX4 644 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 HYIQ5T013 277 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 BMP8AQ7Z5Y6 402 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 CEP57Q86XR8 500 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 SUGP1Q8IWZ8 645 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 GPR65Q8IYL9 337 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 KREMEN2Q8NCW0 462 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 PNMA5Q96PV4 448 aa19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 ACO2Q99798 780 aaKnown RBP19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 CCDC94Q9BW85 323 aaPredicted RBP19.71■□□□□ 0.75
SQSTM1-209ENST00000504627 CCSER1Q9C0I3 900 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms