RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 MRPL17Q9NRX2 175 aaKnown RBP5.49□□□□□ -1.53
USP54-216ENST00000498143 TTLL3Q9Y4R7 772 aa5.49□□□□□ -1.53
USP54-216ENST00000498143 SPG11Q96JI7 2443 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 GSTTP1A0A1W2PQM5 241 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 ZC3H11AO75152 810 aaKnown RBP eCLIP5.48□□□□□ -1.53
USP54-216ENST00000498143 MYCLP1P12525 358 aaPredicted RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 RBMS1P29558 406 aaKnown RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 DR1Q01658 176 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 NFIAQ12857 509 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 HNRNPDQ14103 355 aaKnown RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 STXBP2Q15833 593 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 GEN1Q17RS7 908 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 KMT5BQ4FZB7 885 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 THOC7Q6I9Y2 204 aaKnown RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 ATG14Q6ZNE5 492 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 LRRC49Q8IUZ0 686 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 ENAHQ8N8S7 591 aaPredicted RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 ACMSDQ8TDX5 336 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SH3KBP1Q96B97 665 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SPATA33Q96N06 139 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 TUBA1CQ9BQE3 449 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 EDEM3Q9BZQ6 932 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 KCTD5Q9NXV2 234 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 PCDHAC2Q9Y5I4 1007 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 APAF1O14727 1248 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SLFN14P0C7P3 912 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SPINK2P20155 84 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 MAPK1P28482 360 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 ATP5DP30049 168 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 IL13P35225 146 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 VPS41P49754 854 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 EPHB4P54760 987 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 CYP4A11Q02928 519 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 TSC22D1Q15714 1073 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 AMHR2Q16671 573 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 ARHGAP15Q53QZ3 475 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 AGAP9Q5VTM2 703 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 TWF2Q6IBS0 349 aaKnown RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 CEP85Q6P2H3 762 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 HDXQ7Z353 690 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 GPR155Q7Z3F1 870 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SPATA21Q7Z572 469 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 NLRX1Q86UT6 975 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 C11orf74Q86VG3 221 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 MCF2L2Q86YR7 1114 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 NEK9Q8TD19 979 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SLC7A3Q8WY07 619 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 AGAP3Q96P47 875 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 GMLQ99445 158 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SELENOOQ9BVL4 669 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SCNM1Q9BWG6 230 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 PRKAB1Q9Y478 270 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 RGPD3A6NKT7 1758 aaPredicted RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 RGPD4Q7Z3J3 1758 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 GOLGA8JA6NMD2 632 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 GOLGA8SH3BPF8 625 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 GOLGA8TH3BQL2 631 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 TUBBP07437 444 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 GOLGA8HP0CJ92 632 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 PECAM1P16284 738 aaPredicted RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 PMS1P54277 932 aaKnown RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 COL28A1Q2UY09 1125 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 N4BP2L1Q5TBK1 243 aaPredicted RBP5.48□□□□□ -1.53
USP54-216ENST00000498143 ARMC3Q5W041 872 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 USP37Q86T82 979 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 FCHSD1Q86WN1 690 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 NEDD1Q8NHV4 660 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SMARCC2Q8TAQ2 1214 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 NPLOC4Q8TAT6 608 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SDF4Q9BRK5 362 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 FTHL17Q9BXU8 183 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 CCDC68Q9H2F9 335 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 CD248Q9HCU0 757 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 SPAG17Q6Q759 2223 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 COL18A1P39060 1754 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 CASZ1Q86V15 1759 aa5.48□□□□□ -1.53
USP54-216ENST00000498143 ZNF263O14978 683 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 GLUD1P00367 558 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 PTGS1P23219 599 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 DPP6P42658 865 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 SLC8A3P57103 927 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 IFFO1Q0D2I5 559 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 GRAMD1BQ3KR37 738 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 C4orf46Q504U0 113 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 FAM83BQ5T0W9 1011 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 RASIP1Q5U651 963 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 ZNF574Q6ZN55 896 aaPredicted RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 ABRAQ8N0Z2 381 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 TSTD1Q8NFU3 115 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 ENOX1Q8TC92 643 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 STAG1Q8WVM7 1258 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 CNDP2Q96KP4 475 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 MAP3K14Q99558 947 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 SLX1AQ9BQ83 275 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 SENP7Q9BQF6 1050 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 UQCC2Q9BRT2 126 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 MRPL9Q9BYD2 267 aaKnown RBP5.47□□□□□ -1.53
USP54-216ENST00000498143 ANTXR1Q9H6X2 564 aa5.47□□□□□ -1.53
USP54-216ENST00000498143 VTA1Q9NP79 307 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms