RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 VPS36Q86VN1 386 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 MAP7D3Q8IWC1 876 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 MGARPQ8TDB4 240 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 PACSIN1Q9BY11 444 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 NACAP1Q9BZK3 213 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 TRIM31Q9BZY9 425 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 NT5C3AQ9H0P0 336 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 KRT82Q9NSB4 513 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 STK24Q9Y6E0 443 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 SLC4A4Q9Y6R1 1079 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 V9GY48 417 aaPredicted RBP9.66□□□□□ -0.86
HPS4-217ENST00000496385 AKAP11Q9UKA4 1901 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 C2CD2LO14523 706 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 AP1G1O43747 822 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 H2AFZP0C0S5 128 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 MUTP22033 750 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 POLR2FP61218 127 aaKnown RBP9.66□□□□□ -0.86
HPS4-217ENST00000496385 SCARF1Q14162 830 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 SEC23AQ15436 765 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 CAVIN4Q5BKX8 364 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 ACSBG2Q5FVE4 666 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 B3GNT6Q6ZMB0 384 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 LRRC55Q6ZSA7 311 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 PIK3AP1Q6ZUJ8 805 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 TMTC3Q6ZXV5 915 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 H2AFVQ71UI9 128 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 CROCCP3Q8IVE0 287 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 ART4Q93070 314 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 CEP63Q96MT8 703 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 POLR3CQ9BUI4 534 aaPredicted RBP9.66□□□□□ -0.86
HPS4-217ENST00000496385 UBN1Q9NPG3 1134 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 BTBD7Q9P203 1132 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 ARMCX3Q9UH62 379 aaPredicted RBP9.66□□□□□ -0.86
HPS4-217ENST00000496385 NAGPAQ9UK23 515 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 NENFQ9UMX5 172 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 SNX24Q9Y343 169 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 NUB1Q9Y5A7 615 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 NR2E3Q9Y5X4 410 aa9.66□□□□□ -0.86
HPS4-217ENST00000496385 FZD9O00144 591 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 PHF2O75151 1096 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 PORP16435 677 aaPredicted RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 PTGIRP43119 386 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 EIF6P56537 245 aaKnown RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 SESN3P58005 492 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 DCTN2Q13561 401 aaKnown RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 RAPGEF1Q13905 1077 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 ZC2HC1CQ53FD0 456 aaPredicted RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 ALKBH5Q6P6C2 394 aaKnown RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 C3orf62Q6ZUJ4 267 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 SLF2Q8IX21 1173 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 RIBC1Q8N443 379 aaPredicted RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 KIAA0895Q8NCT3 520 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 MPP4Q96JB8 637 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 AGBL1Q96MI9 1066 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 CADM1Q9BY67 442 aaKnown RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 NMRK2Q9NPI5 230 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 DICER1Q9UPY3 1922 aaKnown RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 ZNF532Q9HCE3 1301 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 TCRBV5S4A2TA0A5A2 114 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 GSC2O15499 205 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 DDAH1O94760 285 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 UBTFL6P0CB48 400 aaPredicted RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 SERPINB3P29508 390 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 MLH1P40692 756 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 CCNFP41002 786 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 SLCO1A2P46721 670 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 PDE1BQ01064 536 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 TTLL12Q14166 644 aaPredicted RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.65□□□□□ -0.86
HPS4-217ENST00000496385 CATIPQ7Z7H3 387 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 ADGRG6Q86SQ4 1221 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 SCUBE1Q8IWY4 988 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 CMTR1Q8N1G2 835 aaKnown RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 PDCD7Q8N8D1 485 aaKnown RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 ANKRD42Q8N9B4 389 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 ERMNQ8TAM6 284 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 ECSITQ9BQ95 431 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 LSM14BQ9BX40 385 aaKnown RBP9.65□□□□□ -0.86
HPS4-217ENST00000496385 TANGO6Q9C0B7 1094 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 LRRC27Q9C0I9 530 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 SH3GLB2Q9NR46 395 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 ZFP69BQ9UJL9 534 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 PHTF1Q9UMS5 762 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 COL4A3BPQ9Y5P4 624 aa9.65□□□□□ -0.86
HPS4-217ENST00000496385 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.64□□□□□ -0.87
HPS4-217ENST00000496385 CCDC162PA2VCL2 907 aa9.64□□□□□ -0.87
HPS4-217ENST00000496385 ZCCHC18P0CG32 403 aa9.64□□□□□ -0.87
HPS4-217ENST00000496385 ALAS1P13196 640 aa9.64□□□□□ -0.87
HPS4-217ENST00000496385 PDE6AP16499 860 aa9.64□□□□□ -0.87
HPS4-217ENST00000496385 VCAM1P19320 739 aa9.64□□□□□ -0.87
HPS4-217ENST00000496385 EPS15P42566 896 aa9.64□□□□□ -0.87
HPS4-217ENST00000496385 FKBP3Q00688 224 aaKnown RBP9.64□□□□□ -0.87
HPS4-217ENST00000496385 PLOD1Q02809 727 aaPredicted RBP9.64□□□□□ -0.87
HPS4-217ENST00000496385 RRP1BQ14684 758 aaKnown RBP9.64□□□□□ -0.87
HPS4-217ENST00000496385 GRIK5Q16478 980 aa9.64□□□□□ -0.87
HPS4-217ENST00000496385 CIAPIN1Q6FI81 312 aa9.64□□□□□ -0.87
HPS4-217ENST00000496385 FBXO33Q7Z6M2 555 aa9.64□□□□□ -0.87
HPS4-217ENST00000496385 PROCA1Q8NCQ7 364 aaPredicted RBP9.64□□□□□ -0.87
HPS4-217ENST00000496385 C10orf82Q8WW14 230 aa9.64□□□□□ -0.87
HPS4-217ENST00000496385 COA1Q9GZY4 146 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms