RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 CEP57Q86XR8 500 aa24.34■■□□□ 1.49
HDDC3-203ENST00000494993 LNX1Q8TBB1 728 aaPredicted RBP24.34■■□□□ 1.49
HDDC3-203ENST00000494993 IFT74Q96LB3 600 aa24.34■■□□□ 1.49
HDDC3-203ENST00000494993 KIFC3Q9BVG8 833 aa24.34■■□□□ 1.49
HDDC3-203ENST00000494993 VPS13AQ96RL7 3174 aa24.34■■□□□ 1.49
HDDC3-203ENST00000494993 NOTCH4Q99466 2003 aa24.34■■□□□ 1.49
HDDC3-203ENST00000494993 SRFP11831 508 aa24.33■■□□□ 1.49
HDDC3-203ENST00000494993 LAMP2P13473 410 aa24.33■■□□□ 1.49
HDDC3-203ENST00000494993 TRAPPC10P48553 1259 aa24.33■■□□□ 1.49
HDDC3-203ENST00000494993 RBM25P49756 843 aaKnown RBP24.33■■□□□ 1.49
HDDC3-203ENST00000494993 HMGN5P82970 282 aaKnown RBP24.33■■□□□ 1.49
HDDC3-203ENST00000494993 GNL2Q13823 731 aaKnown RBP24.33■■□□□ 1.49
HDDC3-203ENST00000494993 ASCL5Q7RTU5 278 aa24.33■■□□□ 1.49
HDDC3-203ENST00000494993 CCDC105Q8IYK2 499 aa24.33■■□□□ 1.49
HDDC3-203ENST00000494993 C4orf32Q8N8J7 132 aa24.33■■□□□ 1.49
HDDC3-203ENST00000494993 KIFAP3Q92845 792 aa24.33■■□□□ 1.49
HDDC3-203ENST00000494993 BHMT2Q9H2M3 363 aa24.33■■□□□ 1.49
HDDC3-203ENST00000494993 POLD4Q9HCU8 107 aa24.33■■□□□ 1.49
HDDC3-203ENST00000494993 DAXXQ9UER7 740 aaPredicted RBP24.33■■□□□ 1.49
HDDC3-203ENST00000494993 GDAQ9Y2T3 454 aa24.33■■□□□ 1.49
HDDC3-203ENST00000494993 KRBA1A5PL33 1030 aa24.32■■□□□ 1.48
HDDC3-203ENST00000494993 EFNA5P52803 228 aa24.32■■□□□ 1.48
HDDC3-203ENST00000494993 NBR1Q14596 966 aa24.32■■□□□ 1.48
HDDC3-203ENST00000494993 LRWD1Q9UFC0 647 aa24.32■■□□□ 1.48
HDDC3-203ENST00000494993 NOL7Q9UMY1 257 aaKnown RBP24.32■■□□□ 1.48
HDDC3-203ENST00000494993 KIAA1024Q9UPX6 916 aa24.32■■□□□ 1.48
HDDC3-203ENST00000494993 PDCD11Q14690 1871 aaKnown RBP24.32■■□□□ 1.48
HDDC3-203ENST00000494993 MIA3Q5JRA6 1907 aa24.31■■□□□ 1.48
HDDC3-203ENST00000494993 HNRNPA1P09651 372 aaKnown RBP eCLIP24.31■■□□□ 1.48
HDDC3-203ENST00000494993 NT5DC1Q5TFE4 455 aa24.31■■□□□ 1.48
HDDC3-203ENST00000494993 LIN9Q5TKA1 542 aa24.31■■□□□ 1.48
HDDC3-203ENST00000494993 ATF7IP2Q5U623 682 aa24.31■■□□□ 1.48
HDDC3-203ENST00000494993 PDXDC1Q6P996 788 aa24.31■■□□□ 1.48
HDDC3-203ENST00000494993 FAM184AQ8NB25 1140 aa24.31■■□□□ 1.48
HDDC3-203ENST00000494993 ZSCAN31Q96LW9 406 aaPredicted RBP24.31■■□□□ 1.48
HDDC3-203ENST00000494993 PRR23AA6NEV1 266 aa24.3■■□□□ 1.48
HDDC3-203ENST00000494993 ANHXE9PGG2 379 aa24.3■■□□□ 1.48
HDDC3-203ENST00000494993 TMEM189-UBE2V1I3L0A0 370 aa24.3■■□□□ 1.48
HDDC3-203ENST00000494993 C8AP07357 584 aa24.3■■□□□ 1.48
HDDC3-203ENST00000494993 FSHRP23945 695 aa24.3■■□□□ 1.48
HDDC3-203ENST00000494993 HTR4Q13639 388 aa24.3■■□□□ 1.48
HDDC3-203ENST00000494993 PPM1LQ5SGD2 360 aa24.3■■□□□ 1.48
HDDC3-203ENST00000494993 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.3■■□□□ 1.48
HDDC3-203ENST00000494993 GRASPQ7Z6J2 395 aaPredicted RBP24.3■■□□□ 1.48
HDDC3-203ENST00000494993 DTWD2Q8NBA8 298 aa24.3■■□□□ 1.48
HDDC3-203ENST00000494993 PPP1R10Q96QC0 940 aaKnown RBP24.3■■□□□ 1.48
HDDC3-203ENST00000494993 DDX19AQ9NUU7 478 aaKnown RBP24.3■■□□□ 1.48
HDDC3-203ENST00000494993 CA14Q9ULX7 337 aa24.3■■□□□ 1.48
HDDC3-203ENST00000494993 ZFP37Q9Y6Q3 630 aaPredicted RBP24.3■■□□□ 1.48
HDDC3-203ENST00000494993 STK25O00506 426 aa24.29■■□□□ 1.48
HDDC3-203ENST00000494993 ADAM12O43184 909 aa24.29■■□□□ 1.48
HDDC3-203ENST00000494993 HOXA9P31269 272 aa24.29■■□□□ 1.48
HDDC3-203ENST00000494993 PDIA5Q14554 519 aa24.29■■□□□ 1.48
HDDC3-203ENST00000494993 GLRA4Q5JXX5 417 aa24.29■■□□□ 1.48
HDDC3-203ENST00000494993 APBB1IPQ7Z5R6 666 aaPredicted RBP24.29■■□□□ 1.48
HDDC3-203ENST00000494993 FRMD5Q7Z6J6 570 aa24.29■■□□□ 1.48
HDDC3-203ENST00000494993 IGSF22Q8N9C0 903 aa24.29■■□□□ 1.48
HDDC3-203ENST00000494993 SNX29Q8TEQ0 813 aa24.29■■□□□ 1.48
HDDC3-203ENST00000494993 SH2B1Q9NRF2 756 aaPredicted RBP24.29■■□□□ 1.48
HDDC3-203ENST00000494993 STK24Q9Y6E0 443 aa24.29■■□□□ 1.48
HDDC3-203ENST00000494993 NUMBLQ9Y6R0 609 aa24.29■■□□□ 1.48
HDDC3-203ENST00000494993 K7ERI5 159 aa24.28■■□□□ 1.48
HDDC3-203ENST00000494993 FGFR3P22607 806 aa24.28■■□□□ 1.48
HDDC3-203ENST00000494993 RFX1P22670 979 aa24.28■■□□□ 1.48
HDDC3-203ENST00000494993 ANGPT1Q15389 498 aa24.28■■□□□ 1.48
HDDC3-203ENST00000494993 GPR152Q8TDT2 470 aa24.28■■□□□ 1.48
HDDC3-203ENST00000494993 RAB34Q9BZG1 259 aa24.28■■□□□ 1.48
HDDC3-203ENST00000494993 TNFSF13BQ9Y275 285 aa24.28■■□□□ 1.48
HDDC3-203ENST00000494993 PHLPP2Q6ZVD8 1323 aa24.28■■□□□ 1.48
HDDC3-203ENST00000494993 SPTBN4Q9H254 2564 aa24.28■■□□□ 1.48
HDDC3-203ENST00000494993 FANCMQ8IYD8 2048 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 B3GAT3O94766 335 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 IGFBP6P24592 240 aaPredicted RBP24.27■■□□□ 1.48
HDDC3-203ENST00000494993 U2AF2P26368 475 aaKnown RBP eCLIP24.27■■□□□ 1.48
HDDC3-203ENST00000494993 CLCNKBP51801 687 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 NTHL1P78549 312 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 PTGDRQ13258 359 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 RAB33AQ14088 237 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 DCLRE1AQ6PJP8 1040 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 NKD2Q969F2 451 aaPredicted RBP24.27■■□□□ 1.48
HDDC3-203ENST00000494993 UROC1Q96N76 676 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 TBC1D17Q9HA65 648 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 SLC2A4RGQ9NR83 387 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 MTRRQ9UBK8 725 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 CDH7Q9ULB5 785 aa24.27■■□□□ 1.48
HDDC3-203ENST00000494993 CCL16O15467 120 aa24.26■■□□□ 1.47
HDDC3-203ENST00000494993 XYLBO75191 536 aa24.26■■□□□ 1.47
HDDC3-203ENST00000494993 OR1D2P34982 312 aa24.26■■□□□ 1.47
HDDC3-203ENST00000494993 TOB1P50616 345 aaPredicted RBP24.26■■□□□ 1.47
HDDC3-203ENST00000494993 PEX3P56589 373 aa24.26■■□□□ 1.47
HDDC3-203ENST00000494993 CD300LGQ6UXG3 332 aa24.26■■□□□ 1.47
HDDC3-203ENST00000494993 CEP120Q8N960 986 aa24.26■■□□□ 1.47
HDDC3-203ENST00000494993 ST13P5Q8NFI4 369 aaPredicted RBP24.26■■□□□ 1.47
HDDC3-203ENST00000494993 SLC7A14Q8TBB6 771 aa24.26■■□□□ 1.47
HDDC3-203ENST00000494993 GOLGA2P5Q9HBQ8 144 aa24.26■■□□□ 1.47
HDDC3-203ENST00000494993 ARHGEF3Q9NR81 526 aa24.26■■□□□ 1.47
HDDC3-203ENST00000494993 PCDHB6Q9Y5E3 794 aa24.26■■□□□ 1.47
HDDC3-203ENST00000494993 CCDC169A6NNP5 214 aa24.25■■□□□ 1.47
HDDC3-203ENST00000494993 E9PMD0 336 aa24.25■■□□□ 1.47
HDDC3-203ENST00000494993 POU2F2P09086 479 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms