RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PQLC1Q8N2U9 271 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 PRPF38AQ8NAV1 312 aaKnown RBP2.88□□□□□ -1.95
HMGB1-208ENST00000490788 SLC16A11Q8NCK7 471 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 OR7D4Q8NG98 312 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 ZFP28Q8NHY6 868 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 IL17DQ8TAD2 202 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 CPT1CQ8TCG5 803 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 TSPEARQ8WU66 669 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 TFAP2CQ92754 450 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 C7orf25Q9BPX7 421 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 ZNF747Q9BV97 191 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 FAM126AQ9BYI3 521 aaPredicted RBP2.88□□□□□ -1.95
HMGB1-208ENST00000490788 REXO4Q9GZR2 422 aaKnown RBP2.88□□□□□ -1.95
HMGB1-208ENST00000490788 MANSC1Q9H8J5 431 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 BCO1Q9HAY6 547 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 LANCL2Q9NS86 450 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 SORCS3Q9UPU3 1222 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 HS3ST3A1Q9Y663 406 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 CUX1P39880 1505 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 MAGI3Q5TCQ9 1506 aa2.88□□□□□ -1.95
HMGB1-208ENST00000490788 hCG_2014768A0A024R1R8 64 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 NPIPB8E9PQR5 432 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 K7ESF4 209 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 TRIM24O15164 1050 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 FAM20BO75063 409 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 KATNA1O75449 491 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 RPLP2P05387 115 aaKnown RBP2.87□□□□□ -1.95
HMGB1-208ENST00000490788 ADH4P08319 380 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 SNRPA1P09661 255 aaKnown RBP2.87□□□□□ -1.95
HMGB1-208ENST00000490788 C1SP09871 688 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 RBP3P10745 1247 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 MAKP20794 623 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 AGXTP21549 392 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 IARSP41252 1262 aaKnown RBP2.87□□□□□ -1.95
HMGB1-208ENST00000490788 MTNR1BP49286 362 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 FLT3LGP49771 235 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 RAP2BP61225 183 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 AMPD3Q01432 767 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 CREMQ03060 361 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 VPS72Q15906 364 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 ABCB5Q2M3G0 1257 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 RABL3Q5HYI8 236 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 FAM47AQ5JRC9 791 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 MIIPQ5JXC2 388 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 PRAMEF14Q5SWL7 426 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 EFCAB2Q5VUJ9 269 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 KCNK18Q7Z418 384 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 RSPH3Q86UC2 560 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 ZNF483Q8TF39 744 aaPredicted RBP2.87□□□□□ -1.95
HMGB1-208ENST00000490788 SLC25A43Q8WUT9 341 aaPredicted RBP2.87□□□□□ -1.95
HMGB1-208ENST00000490788 CYFIP2Q96F07 1278 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 ZNF503Q96F45 646 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 PHACTR3Q96KR7 559 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 SLC2A13Q96QE2 648 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 DCLRE1CQ96SD1 692 aaKnown RBP2.87□□□□□ -1.95
HMGB1-208ENST00000490788 CEP89Q96ST8 783 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 SMAD5Q99717 465 aaKnown RBP2.87□□□□□ -1.95
HMGB1-208ENST00000490788 ENKD1Q9H0I2 346 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 ZNF703Q9H7S9 590 aaPredicted RBP2.87□□□□□ -1.95
HMGB1-208ENST00000490788 PCDH12Q9NPG4 1184 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 DMRT3Q9NQL9 472 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 HOMER2Q9NSB8 354 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 TRHDEQ9UKU6 1024 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 INTUQ9ULD6 942 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 FGD5Q6ZNL6 1462 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 CPS1P31327 1500 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 XDHP47989 1333 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 ZMYM3Q14202 1370 aa2.87□□□□□ -1.95
HMGB1-208ENST00000490788 CAMSAP1Q5T5Y3 1602 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 KLRG2A4D1S0 409 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-208ENST00000490788 TRIM75PA6NK02 468 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 TBKBP1A7MCY6 615 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 DIRC3C9JPN6 131 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 ADCY6O43306 1168 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 RPS6KA4O75676 772 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 SNUPNO95149 360 aaKnown RBP2.86□□□□□ -1.95
HMGB1-208ENST00000490788 PEX11BO96011 259 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 HLA-DOAP06340 250 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 ATP5JP18859 108 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 POU3F3P20264 500 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-208ENST00000490788 MCAMP43121 646 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 CDKN1CP49918 316 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-208ENST00000490788 RABGGTBP53611 331 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 CLRN1P58418 232 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 EVA1CP58658 441 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 DGCR2P98153 550 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 MGAT2Q10469 447 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 SP140Q13342 867 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 MTMR1Q13613 665 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 PTPN21Q16825 1174 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 ATXN7L2Q5T6C5 722 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-208ENST00000490788 PPP4R3AQ6IN85 833 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 CRIP3Q6Q6R5 217 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 RHOT1Q8IXI2 618 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 TRMT2AQ8IZ69 625 aaKnown RBP2.86□□□□□ -1.95
HMGB1-208ENST00000490788 ZNF276Q8N554 614 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 RNF169Q8NCN4 708 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 C1orf162Q8NEQ5 155 aaPredicted RBP2.86□□□□□ -1.95
HMGB1-208ENST00000490788 REPS2Q8NFH8 660 aa2.86□□□□□ -1.95
HMGB1-208ENST00000490788 FBXO18Q8NFZ0 1043 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms