RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	PPFIBP1	Q86W92	1011 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	TMTC1	Q8IUR5	882 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	SCFD1	Q8WVM8	642 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	GPRASP2	Q96D09	838 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	ATG4C	Q96DT6	458 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	INPP4A	Q96PE3	977 aa	Predicted RBP	6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	FIZ1	Q96SL8	496 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	TSG101	Q99816	390 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	PDCD2L	Q9BRP1	358 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	TUBGCP2	Q9BSJ2	902 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	ZNF577	Q9BSK1	485 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	SYT17	Q9BSW7	474 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	TIPIN	Q9BVW5	301 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	STRA6	Q9BX79	667 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	TEKT3	Q9BXF9	490 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	TEX13B	Q9BXU2	312 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	TMPRSS13	Q9BYE2	586 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	TANGO6	Q9C0B7	1094 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	TGIF2	Q9GZN2	237 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	RNF208	Q9H0X6	261 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	UNC45A	Q9H3U1	944 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	CCSER2	Q9H7U1	834 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	RAVER2	Q9HCJ3	691 aa	Known RBP	6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	AGO4	Q9HCK5	861 aa	Known RBP	6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	SLC39A2	Q9NP94	309 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	PXMP2	Q9NR77	195 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	KCNH7	Q9NS40	1196 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	HOXC10	Q9NYD6	342 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	TAB2	Q9NYJ8	693 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	MAGEC2	Q9UBF1	373 aa	Predicted RBP	6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	DDX41	Q9UJV9	622 aa	Known RBP	6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	DBR1	Q9UK59	544 aa	Known RBP	6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	ODF2L	Q9ULJ1	636 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	CAPN11	Q9UMQ6	739 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	ZHX2	Q9Y6X8	837 aa		6.11	□□□□□ -1.43
ATG4A-208	ENST00000489247	NFASC	O94856	1347 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	PHLPP2	Q6ZVD8	1323 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	MYH7B	A7E2Y1	1941 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	DICER1	Q9UPY3	1922 aa	Known RBP	6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247		A0A0G2JLL6	359 aa	Predicted RBP	6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	RASSF10	A6NK89	507 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	PDXK	O00764	312 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	CXCL11	O14625	94 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	SLC16A3	O15427	465 aa	Known RBP	6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	CTIF	O43310	598 aa	Known RBP	6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	PAGE1	O75459	146 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	TPM1	P09493	284 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	ALAS1	P13196	640 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	TNNT1	P13805	278 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	DRD2	P14416	443 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	SFN	P31947	248 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	ICAM3	P32942	547 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	HOXD13	P35453	343 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	FXR1	P51114	621 aa	Known RBP eCLIP	6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	PSMC6	P62333	389 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	UBXN1	Q04323	297 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	PPP2R3A	Q06190	1150 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	PPAT	Q06203	517 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	ITGB3BP	Q13352	177 aa	Predicted RBP	6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	ALCAM	Q13740	583 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	VGLL4	Q14135	290 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	MYBPC2	Q14324	1141 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	TMEM132B	Q14DG7	1078 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	PGM5	Q15124	567 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	SYCP1	Q15431	976 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	VWA3B	Q502W6	1294 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	HSP90AA4P	Q58FG1	418 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	RINT1	Q6NUQ1	792 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	TRIM65	Q6PJ69	517 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	RNF207	Q6ZRF8	634 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	PRRT2	Q7Z6L0	340 aa	Predicted RBP	6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	TRIM59	Q8IWR1	403 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	C4orf19	Q8IY42	314 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	ARMC10	Q8N2F6	343 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	CHST13	Q8NET6	341 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	IL31RA	Q8NI17	732 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	HPS3	Q969F9	1004 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	ZKSCAN4	Q969J2	545 aa	Predicted RBP	6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	DYDC2	Q96IM9	177 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	REEP2	Q9BRK0	252 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	NOC4L	Q9BVI4	516 aa	Known RBP	6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	VPS16	Q9H269	839 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	BHMT2	Q9H2M3	363 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	ST6GALNAC4	Q9H4F1	302 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	ZSWIM4	Q9H7M6	989 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	L2HGDH	Q9H9P8	463 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	CAPN10	Q9HC96	672 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	RNF146	Q9NTX7	359 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	ABHD10	Q9NUJ1	306 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	TMEM39A	Q9NV64	488 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	RGL1	Q9NZL6	768 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	TMOD4	Q9NZQ9	345 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	FAM184B	Q9ULE4	1060 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	MAPK8IP1	Q9UQF2	711 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	SIK3	Q9Y2K2	1263 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	PPP2R2C	Q9Y2T4	447 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	R3HCC1	Q9Y3T6	440 aa	Known RBP	6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	COL4A3BP	Q9Y5P4	624 aa		6.1	□□□□□ -1.43
ATG4A-208	ENST00000489247	LOC285556	D6RIA3	1793 aa		6.09	□□□□□ -1.43
ATG4A-208	ENST00000489247	PFAS	O15067	1338 aa		6.09	□□□□□ -1.43

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