RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 RIN2Q8WYP3 895 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 ZBTB45Q96K62 511 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 NLRP4Q96MN2 994 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 TARS2Q9BW92 718 aaKnown RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 STK33Q9BYT3 514 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 IFIH1Q9BYX4 1025 aaKnown RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 PLEKHA4Q9H4M7 779 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 TOPORSQ9NS56 1045 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 Q9Y3F1 56 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 F8VZ95 297 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 PJA2O43164 708 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 MYCP01106 439 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 SMIM10L2AP0DMW4 78 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 SMIM10L2BP0DMW5 78 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 MXI1P50539 228 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 PURAQ00577 322 aaKnown RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 PTK2Q05397 1052 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 C2orf54Q08AI8 447 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 MFSD10Q14728 455 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 WHAMMP3Q1A5X7 153 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 FOXR1Q6PIV2 292 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 HDXQ7Z353 690 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 TRAPPC11Q7Z392 1133 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 ARHGEF19Q8IW93 802 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 TCP11Q8WWU5 503 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 POP1Q99575 1024 aaKnown RBP13.14□□□□□ -0.31
HDAC6-230ENST00000488543 FAM213AQ9BRX8 229 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 EHD2Q9NZN4 543 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 NENFQ9UMX5 172 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 DAAM1Q9Y4D1 1078 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 TRIM17Q9Y577 477 aa13.14□□□□□ -0.31
HDAC6-230ENST00000488543 A0A087X0T9 212 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 KRT86O43790 486 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 EXTL3O43909 919 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 FAM228BP0C875 321 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 MYBL2P10244 700 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 RARBP10826 455 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 HSPA6P17066 643 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 MAGEA1P43355 309 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 TNNT3P45378 269 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-230ENST00000488543 GJA9P57773 515 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 TMEM62Q0P6H9 643 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 DRAP1Q14919 205 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-230ENST00000488543 ENOX2Q16206 610 aaKnown RBP13.13□□□□□ -0.31
HDAC6-230ENST00000488543 SLC18A3Q16572 532 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 CRELD2Q6UXH1 353 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-230ENST00000488543 EXOC8Q8IYI6 725 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 SEMA4DQ92854 862 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 CCDC127Q96BQ5 260 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 MINDY3Q9H8M7 445 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 HMGCRP04035 888 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 IQCF3P0C7M6 154 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 CAPN2P17655 700 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 SOX5P35711 763 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 STAT1P42224 750 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 PSEN2P49810 448 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 WNT7BP56706 349 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 NLRP11P59045 1033 aaKnown RBP13.13□□□□□ -0.31
HDAC6-230ENST00000488543 TMEM8AQ9HCN3 771 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 XPNPEP3Q9NQH7 507 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 SAGE1Q9NXZ1 904 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 LCMT1Q9UIC8 334 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 AKT3Q9Y243 479 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 COQ4Q9Y3A0 265 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 PTCH2Q9Y6C5 1203 aa13.13□□□□□ -0.31
HDAC6-230ENST00000488543 BZW2Q9Y6E2 419 aaKnown RBP13.13□□□□□ -0.31
HDAC6-230ENST00000488543 A0A0B4J269 797 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 MSCO60682 206 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 ADAMTS4O75173 837 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 GFPT2O94808 682 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 FERP16591 822 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 GTF2H1P32780 548 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 VASPP50552 380 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-230ENST00000488543 MAP2K1Q02750 393 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-230ENST00000488543 KIF5AQ12840 1032 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 MXD4Q14582 209 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-230ENST00000488543 ZBTB41Q5SVQ8 909 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 MAP3K21Q5TCX8 1036 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 KIAA0319LQ8IZA0 1049 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 LINC01465Q8N7H1 131 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 SH3TC2Q8TF17 1288 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 BEGAINQ9BUH8 593 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 TSGA10Q9BZW7 698 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 FAM49AQ9H0Q0 323 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-230ENST00000488543 CALCOCO1Q9P1Z2 691 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 AGO2Q9UKV8 859 aaKnown RBP13.12□□□□□ -0.31
HDAC6-230ENST00000488543 KAT6AQ92794 2004 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 ZNF233A6NK53 670 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 HAS3O00219 553 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 KIAA0391O15091 583 aaKnown RBP13.12□□□□□ -0.31
HDAC6-230ENST00000488543 TREHO43280 583 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 INHAP05111 366 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 RFX1P22670 979 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 EFNA5P52803 228 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 FAM193AP78312 1265 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 CLDN10P78369 228 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 PSMD6Q15008 389 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 KCTD19Q17RG1 926 aaPredicted RBP13.12□□□□□ -0.31
HDAC6-230ENST00000488543 NFRKBQ6P4R8 1299 aa13.12□□□□□ -0.31
HDAC6-230ENST00000488543 C15orf39Q6ZRI6 1047 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms