RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 LRRC55Q6ZSA7 311 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 MRGPRGQ86SM5 289 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 SYNE4Q8N205 404 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.36□□□□□ -1.55
VPS41-213ENST00000485955 ZFP28Q8NHY6 868 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 MYEOVQ96EZ4 313 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 PHACTR3Q96KR7 559 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 MRI1Q9BV20 369 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 SLITRK6Q9H5Y7 841 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 DKK2Q9UBU2 259 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 SLC23A1Q9UHI7 598 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 AJAP1Q9UKB5 411 aaPredicted RBP5.36□□□□□ -1.55
VPS41-213ENST00000485955 ZBTB21Q9ULJ3 1066 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 DNM3Q9UQ16 869 aa5.36□□□□□ -1.55
VPS41-213ENST00000485955 USP15Q9Y4E8 981 aaPredicted RBP5.36□□□□□ -1.55
VPS41-213ENST00000485955 WDR33Q9C0J8 1336 aaKnown RBP5.35□□□□□ -1.55
VPS41-213ENST00000485955 TMEM200CA6NKL6 621 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 RNASET2O00584 256 aaKnown RBP5.35□□□□□ -1.55
VPS41-213ENST00000485955 FOXN1O15353 648 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 PCDHGA12O60330 932 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 ABHD16AO95870 558 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 AMY1AP04745 511 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 CDK11BP21127 795 aaKnown RBP5.35□□□□□ -1.55
VPS41-213ENST00000485955 ALDH1A3P47895 512 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 EVA1CP58658 441 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 SP140Q13342 867 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 MTMR1Q13613 665 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 CLUL1Q15846 466 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 BEAN1Q3B7T3 259 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 RNF187Q5TA31 235 aaPredicted RBP5.35□□□□□ -1.55
VPS41-213ENST00000485955 NECAB2Q7Z6G3 386 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 ZGPATQ8N5A5 531 aaKnown RBP5.35□□□□□ -1.55
VPS41-213ENST00000485955 C1orf162Q8NEQ5 155 aaPredicted RBP5.35□□□□□ -1.55
VPS41-213ENST00000485955 NRG4Q8WWG1 115 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 JADE3Q92613 823 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 FAXDC2Q96IV6 333 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 AGAP2Q99490 1192 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 PRRX2Q99811 253 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 SENP6Q9GZR1 1112 aaPredicted RBP5.35□□□□□ -1.55
VPS41-213ENST00000485955 ANKFY1Q9P2R3 1169 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 INTUQ9ULD6 942 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 MAP3K2Q9Y2U5 619 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 PCDHGA9Q9Y5G4 932 aaKnown RBP5.35□□□□□ -1.55
VPS41-213ENST00000485955 PCDHGA8Q9Y5G5 932 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 PCDHGA7Q9Y5G6 932 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 PCDHGA6Q9Y5G7 932 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 PCDHGA3Q9Y5H0 932 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 DMRT1Q9Y5R6 373 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 ACTL7AQ9Y615 435 aa5.35□□□□□ -1.55
VPS41-213ENST00000485955 PRSS23O95084 383 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 MT-CO1P00395 513 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 SNRPA1P09661 255 aaKnown RBP5.34□□□□□ -1.55
VPS41-213ENST00000485955 RAP2AP10114 183 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 IL2RBP14784 551 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 GUCY2FP51841 1108 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 FSTL1Q12841 308 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 CRB2Q5IJ48 1285 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 RRP12Q5JTH9 1297 aaKnown RBP5.34□□□□□ -1.55
VPS41-213ENST00000485955 LY6G5CQ5SRR4 150 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 AGAP9Q5VTM2 703 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 KCNV1Q6PIU1 500 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 MED25Q71SY5 747 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 AMOTL1Q8IY63 956 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 CCHCR1Q8TD31 782 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 LANCL2Q9NS86 450 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 TUBD1Q9UJT1 453 aa5.34□□□□□ -1.55
VPS41-213ENST00000485955 GAGE12BA1L429 117 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 CCDC78A2IDD5 438 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 GAGE12HA6NDE8 117 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 DIRC3C9JPN6 131 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 RAMP2O60895 175 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 KATNA1O75449 491 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 ENDOD1O94919 500 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 ELANEP08246 267 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 SLC6A2P23975 617 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 COL10A1Q03692 680 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 FAM50AQ14320 339 aaKnown RBP5.33□□□□□ -1.56
VPS41-213ENST00000485955 UBXN2BQ14CS0 331 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 PTPAQ15257 358 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 SYDE2Q5VT97 1194 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 TSHZ3Q63HK5 1081 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 OTUD7BQ6GQQ9 843 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 PLXDC1Q8IUK5 500 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 PRPF38AQ8NAV1 312 aaKnown RBP5.33□□□□□ -1.56
VPS41-213ENST00000485955 CPEB3Q8NE35 698 aaKnown RBP5.33□□□□□ -1.56
VPS41-213ENST00000485955 GPR150Q8NGU9 434 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 ADAM2Q99965 735 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 WDR11Q9BZH6 1224 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 FBXO34Q9NWN3 711 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 MKS1Q9NXB0 559 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 MOCS1Q9NZB8 636 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 TRHDEQ9UKU6 1024 aa5.33□□□□□ -1.56
VPS41-213ENST00000485955 GRID2IPA4D2P6 1211 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 UNC119BA6NIH7 251 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 FZD9O00144 591 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 GABRDO14764 452 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 NDUFS2O75306 463 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 ATP5JP18859 108 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 C5AR1P21730 350 aa5.32□□□□□ -1.56
VPS41-213ENST00000485955 PROZP22891 400 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms