RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PLEKHA5Q9HAU0 1116 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 METTL14Q9HCE5 456 aaKnown RBP13.3□□□□□ -0.28
SDC1-206ENST00000482879 UBN1Q9NPG3 1134 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 TOPORSQ9NS56 1045 aaPredicted RBP13.3□□□□□ -0.28
SDC1-206ENST00000482879 ARMCX3Q9UH62 379 aaPredicted RBP13.3□□□□□ -0.28
SDC1-206ENST00000482879 GIT1Q9Y2X7 761 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 PTPRSQ13332 1948 aa13.3□□□□□ -0.28
SDC1-206ENST00000482879 FNDC1Q4ZHG4 1894 aaPredicted RBP13.29□□□□□ -0.28
SDC1-206ENST00000482879 TTC26A0AVF1 554 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 LACTBL1A8MY62 500 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 UPP2O95045 317 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 IL18RAPO95256 599 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 CDK11BP21127 795 aaKnown RBP13.29□□□□□ -0.28
SDC1-206ENST00000482879 TPM4P67936 248 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 DEFB103AP81534 67 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 PPP2R3AQ06190 1150 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 PSMD6Q15008 389 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 SURF1Q15526 300 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 INTS8Q75QN2 995 aaKnown RBP13.29□□□□□ -0.28
SDC1-206ENST00000482879 CD302Q8IX05 232 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 CCDC127Q96BQ5 260 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 BORCS6Q96GS4 357 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 GAD1Q99259 594 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 RBSNQ9H1K0 784 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 MTIF3Q9H2K0 278 aaKnown RBP13.29□□□□□ -0.28
SDC1-206ENST00000482879 RSAD1Q9HA92 442 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 PDE11AQ9HCR9 933 aa13.29□□□□□ -0.28
SDC1-206ENST00000482879 KCNJ18B7U540 433 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 MEFVO15553 781 aaPredicted RBP13.28□□□□□ -0.28
SDC1-206ENST00000482879 HOXA2O43364 376 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 OFD1O75665 1012 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 FGFR1P11362 822 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 ZNF18P17022 549 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 MLH1P40692 756 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 MTIF2P46199 727 aaKnown RBP13.28□□□□□ -0.28
SDC1-206ENST00000482879 VAMP7P51809 220 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 WNT7BP56706 349 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 KCNJ12Q14500 433 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 TCP11X2Q5H9J9 407 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 CDKAL1Q5VV42 579 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 FAM117BQ6P1L5 589 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 GLB1LQ6UWU2 654 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 ALKAL1Q6UXT8 129 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 CRIPAKQ8N1N5 446 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 PLEKHO2Q8TD55 490 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 TMC2Q8TDI7 906 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 PARD3BQ8TEW8 1205 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 TOP1MTQ969P6 601 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 SNX27Q96L92 541 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 FNBP1Q96RU3 617 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 RPS6KC1Q96S38 1066 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 CXCL16Q9H2A7 254 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 HSD3B7Q9H2F3 369 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 ASB7Q9H672 318 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 RNF19AQ9NV58 838 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 CXXC1Q9P0U4 656 aaPredicted RBP13.28□□□□□ -0.28
SDC1-206ENST00000482879 INPP5FQ9Y2H2 1132 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 SLC4A7Q9Y6M7 1214 aa13.28□□□□□ -0.28
SDC1-206ENST00000482879 ARL5CA6NH57 179 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 DLATP10515 647 aaKnown RBP13.27□□□□□ -0.29
SDC1-206ENST00000482879 TNNI1P19237 187 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 EEF1GP26641 437 aaKnown RBP13.27□□□□□ -0.29
SDC1-206ENST00000482879 MARSP56192 900 aaKnown RBP13.27□□□□□ -0.29
SDC1-206ENST00000482879 MLLT1Q03111 559 aaPredicted RBP13.27□□□□□ -0.29
SDC1-206ENST00000482879 SPAG1Q07617 926 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 BFSP1Q12934 665 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 XKR4Q5GH76 650 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 CLLU1OSQ5K130 101 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 C9orf50Q5SZB4 431 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 TCERG1LQ5VWI1 586 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 JADE1Q6IE81 842 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 TMCO2Q7Z6W1 182 aaPredicted RBP13.27□□□□□ -0.29
SDC1-206ENST00000482879 USP37Q86T82 979 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 ABI1Q8IZP0 508 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 ANKRD20A12PQ8NF67 263 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 HELQQ8TDG4 1101 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 KIF12Q96FN5 646 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 ZFP42Q96MM3 310 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 POP1Q99575 1024 aaKnown RBP13.27□□□□□ -0.29
SDC1-206ENST00000482879 GDF15Q99988 308 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 UBE2OQ9C0C9 1292 aaKnown RBP13.27□□□□□ -0.29
SDC1-206ENST00000482879 MIOSQ9NXC5 875 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 CNTN3Q9P232 1028 aa13.27□□□□□ -0.29
SDC1-206ENST00000482879 SMIM28A0A1B0GU29 152 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 LRRIQ3A6PVS8 624 aaPredicted RBP13.26□□□□□ -0.29
SDC1-206ENST00000482879 TRIM49P0CI25 452 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 TRIM49CP0CI26 452 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 ATP1A3P13637 1013 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 KCNE1P15382 129 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 GATMP50440 423 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 SCNN1GP51170 649 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 AFF1P51825 1210 aaKnown RBP13.26□□□□□ -0.29
SDC1-206ENST00000482879 DLG4P78352 724 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 ENPEPQ07075 957 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 TMEM132DQ14C87 1099 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 SHHQ15465 462 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 DCAF17Q5H9S7 520 aaPredicted RBP13.26□□□□□ -0.29
SDC1-206ENST00000482879 NOMO2Q5JPE7 1267 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 GLRA4Q5JXX5 417 aa13.26□□□□□ -0.29
SDC1-206ENST00000482879 LMBRD2Q68DH5 695 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms