RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 ZSCAN26Q16670 478 aa13.13□□□□□ -0.31
PTPRF-212ENST00000477970 ZACNQ401N2 412 aa13.13□□□□□ -0.31
PTPRF-212ENST00000477970 IFT81Q8WYA0 676 aa13.13□□□□□ -0.31
PTPRF-212ENST00000477970 RIN2Q8WYP3 895 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-212ENST00000477970 TRIM11Q96F44 468 aa13.13□□□□□ -0.31
PTPRF-212ENST00000477970 FAM129AQ9BZQ8 928 aa13.13□□□□□ -0.31
PTPRF-212ENST00000477970 SEPT11Q9NVA2 429 aaKnown RBP13.13□□□□□ -0.31
PTPRF-212ENST00000477970 CTTNBP2NLQ9P2B4 639 aa13.13□□□□□ -0.31
PTPRF-212ENST00000477970 ERICH4A6NGS2 130 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 CYP26A1O43174 497 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 PHACTR2O75167 634 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 FGGP02679 453 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 COPB2P35606 906 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 BPIFB4P59827 614 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 CYP1B1Q16678 543 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 SLC47A2Q86VL8 602 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 C2orf69Q8N8R5 385 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 AP1M1Q9BXS5 423 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 C4BPAP04003 597 aaKnown RBP13.12□□□□□ -0.31
PTPRF-212ENST00000477970 POLGP54098 1239 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-212ENST00000477970 STRN3Q13033 797 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 CLEC16AQ2KHT3 1053 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.12□□□□□ -0.31
PTPRF-212ENST00000477970 DDX47Q9H0S4 455 aaKnown RBP13.12□□□□□ -0.31
PTPRF-212ENST00000477970 PCYOX1Q9UHG3 505 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 CNTN6Q9UQ52 1028 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 UTP11Q9Y3A2 253 aaKnown RBP13.12□□□□□ -0.31
PTPRF-212ENST00000477970 ADGRA2Q96PE1 1338 aa13.12□□□□□ -0.31
PTPRF-212ENST00000477970 ESYT3A0FGR9 886 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 ITGA4P13612 1032 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 LIG4P49917 911 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 HNRNPH2P55795 449 aaKnown RBP13.11□□□□□ -0.31
PTPRF-212ENST00000477970 RNASE9P60153 205 aaKnown RBP13.11□□□□□ -0.31
PTPRF-212ENST00000477970 DEFB115Q30KQ5 88 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 TTMPQ5BVD1 217 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 ALG3Q92685 438 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 CCDC127Q96BQ5 260 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 PCDHA3Q9Y5H8 950 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 LOC102724159A0A0B4J2E5 919 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 GAS2O43903 313 aaKnown RBP13.11□□□□□ -0.31
PTPRF-212ENST00000477970 MMEP08473 750 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 CHRNA3P32297 505 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 VGLL4Q14135 290 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 NEDD9Q14511 834 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 PWP2Q15269 919 aaKnown RBP13.11□□□□□ -0.31
PTPRF-212ENST00000477970 EXOC8Q8IYI6 725 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 C12orf50Q8NA57 414 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-212ENST00000477970 PHF2O75151 1096 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 FARP2O94887 1054 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-212ENST00000477970 UNGP13051 313 aaPredicted RBP13.11□□□□□ -0.31
PTPRF-212ENST00000477970 GLRA2P23416 452 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 NF2P35240 595 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 AP3M2P53677 418 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 ZNF516Q92618 1163 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 TXLNGYQ9BZA5 131 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 C1orf112Q9NSG2 853 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 TELO2Q9Y4R8 837 aa13.11□□□□□ -0.31
PTPRF-212ENST00000477970 A0A0G2JLL6 359 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 SRRM3A6NNA2 597 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 HMGB1P1B2RPK0 211 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 SOX10P56693 466 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 MTERF2Q49AM1 385 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 FAM160B1Q5W0V3 765 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 DUPD1Q68J44 220 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 KCNV1Q6PIU1 500 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 KDM7AQ6ZMT4 941 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 TRIM72Q6ZMU5 477 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 PRRT2Q7Z6L0 340 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 ZNF564Q8TBZ8 553 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 ASAP3Q8TDY4 903 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 BICD1Q96G01 975 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 FAM167AQ96KS9 214 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 POP1Q99575 1024 aaKnown RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 FAM213AQ9BRX8 229 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 NRBP2Q9NSY0 501 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 AMACRQ9UHK6 382 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 AGO2Q9UKV8 859 aaKnown RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 TRPC6Q9Y210 931 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 PCDHB2Q9Y5E7 798 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 ZSWIM8A7E2V4 1837 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 GSTTP1A0A1W2PQM5 241 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 H0YGN5 161 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 UBA1P22314 1058 aaKnown RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 PRAMEF18Q5VWM3 479 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 CRELD2Q6UXH1 353 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 ZPBP2Q6X784 338 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 CYFIP1Q7L576 1253 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 ANKRD35Q8N283 1001 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 SLC7A3Q8WY07 619 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 CGRRF1Q99675 332 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 TOPORSQ9NS56 1045 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 NFS1Q9Y697 457 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 A0A0B4J269 797 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 MAFO75444 373 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 CYP1A1P04798 512 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 COMTP21964 271 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 LRRC31Q6UY01 552 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 REM2Q8IYK8 340 aaPredicted RBP13.1□□□□□ -0.31
PTPRF-212ENST00000477970 ATP8B4Q8TF62 1192 aa13.1□□□□□ -0.31
PTPRF-212ENST00000477970 SLCO2A1Q92959 643 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms