RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 TMEM39AQ9NV64 488 aa11.12□□□□□ -0.63
PRPF38A-202ENST00000474048 CPSF3Q9UKF6 684 aaKnown RBP11.12□□□□□ -0.63
PRPF38A-202ENST00000474048 PADI3Q9ULW8 664 aa11.12□□□□□ -0.63
PRPF38A-202ENST00000474048 LUC7L2Q9Y383 392 aaKnown RBP11.12□□□□□ -0.63
PRPF38A-202ENST00000474048 DAAM1Q9Y4D1 1078 aa11.12□□□□□ -0.63
PRPF38A-202ENST00000474048 CITO14578 2027 aa11.12□□□□□ -0.63
PRPF38A-202ENST00000474048 RALGAPA2Q2PPJ7 1873 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 TANC1Q9C0D5 1861 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 TTLL13PA6NNM8 815 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 CLTBP09497 229 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 ITGA4P13612 1032 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 TNFSF9P41273 254 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 RBL2Q08999 1139 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 LPIN1Q14693 890 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 TMEM132DQ14C87 1099 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 C1orf53Q5VUE5 145 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 CCDC186Q7Z3E2 898 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 ANKRD33Q7Z3H0 272 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 NT5DC4Q86YG4 428 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 RNF169Q8NCN4 708 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 FBXL13Q8NEE6 735 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 CCDC112Q8NEF3 446 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 DIS3LQ8TF46 1054 aaKnown RBP11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 SEPT8Q92599 483 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 DHX38Q92620 1227 aaKnown RBP11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 APBB2Q92870 758 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 WNT8BQ93098 351 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 KIF12Q96FN5 646 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 PPP1R12CQ9BZL4 782 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 NUCKS1Q9H1E3 243 aaKnown RBP11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 PLEKHA5Q9HAU0 1116 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 PTPRHQ9HD43 1115 aa11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.11□□□□□ -0.63
PRPF38A-202ENST00000474048 CD4P01730 458 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 KRT19P08727 400 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 CCDC172P0C7W6 258 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 DLG4P78352 724 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 TLE2Q04725 743 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 RAPGEF1Q13905 1077 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 ENOX2Q16206 610 aaKnown RBP11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 TRIM71Q2Q1W2 868 aaKnown RBP11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 CEP120Q8N960 986 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 ZSWIM2Q8NEG5 633 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 BEST2Q8NFU1 509 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 BORCS6Q96GS4 357 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 NT5C1BQ96P26 610 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 TSPAN18Q96SJ8 248 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 EIF2AQ9BY44 585 aaKnown RBP11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 EDEM3Q9BZQ6 932 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 DNAI2Q9GZS0 605 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 INTS2Q9H0H0 1204 aaKnown RBP11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 ERVK-5Q9HDB9 667 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 UBN1Q9NPG3 1134 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 FAM105AQ9NUU6 356 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 INTS13Q9NVM9 706 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 SNTG2Q9NY99 539 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 CEP72Q9P209 647 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 LRFN2Q9ULH4 789 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 IPPQ9Y573 584 aa11.1□□□□□ -0.63
PRPF38A-202ENST00000474048 ABLIM1O14639 778 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 MFAP3LO75121 409 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 ZC3H11AO75152 810 aaKnown RBP eCLIP11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 RECQL4O94761 1208 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 IPO7O95373 1038 aaKnown RBP11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 P4HA1P13674 534 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 RAG1P15918 1043 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 ATF7P17544 494 aaPredicted RBP11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 HOXA11P31270 313 aaPredicted RBP11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 CASP14P31944 242 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 RFC2P35250 354 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 KRT9P35527 623 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 MFAP3P55082 362 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 POLR2FP61218 127 aaKnown RBP11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 ZBED6P86452 979 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 PTPN21Q16825 1174 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 CBWD6Q4V339 395 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 FIGNQ5HY92 759 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 CBWD3Q5JTY5 395 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 CBWD5Q5RIA9 395 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 ZBTB41Q5SVQ8 909 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 LMBRD2Q68DH5 695 aaPredicted RBP11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 CRELD2Q6UXH1 353 aaPredicted RBP11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 ABI1Q8IZP0 508 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 POP1Q99575 1024 aaKnown RBP11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 ADAM2Q99965 735 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 MTMR12Q9C0I1 747 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 HAPLN2Q9GZV7 340 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 TMEM117Q9H0C3 514 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 NXF3Q9H4D5 531 aaKnown RBP11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 PLCB1Q9NQ66 1216 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 SLC38A7Q9NVC3 462 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 RAB20Q9NX57 234 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 DERAQ9Y315 318 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 C2CD2Q9Y426 696 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 PCDHB2Q9Y5E7 798 aa11.09□□□□□ -0.63
PRPF38A-202ENST00000474048 A0A1W2PQJ5 194 aa11.08□□□□□ -0.64
PRPF38A-202ENST00000474048 LACTBL1A8MY62 500 aa11.08□□□□□ -0.64
PRPF38A-202ENST00000474048 PMM2O15305 246 aa11.08□□□□□ -0.64
PRPF38A-202ENST00000474048 OFD1O75665 1012 aa11.08□□□□□ -0.64
PRPF38A-202ENST00000474048 COL6A1P12109 1028 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms