RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 TMC2Q8TDI7 906 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 CHURC1Q8WUH1 139 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 LRRC37BQ96QE4 947 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 SMC6Q96SB8 1091 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 ARHGEF10LQ9HCE6 1279 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 SCINQ9Y6U3 715 aa6.53□□□□□ -1.36
HERC4-209ENST00000473533 FAM86B1E9PN63 330 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 DKC1O60832 514 aaKnown RBP eCLIP6.52□□□□□ -1.37
HERC4-209ENST00000473533 SLITRK3O94933 977 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 FAM86B2P0C5J1 330 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 TRIM49P0CI25 452 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 TRIM49CP0CI26 452 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 PYGMP11217 842 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 PHBP35232 272 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 NBPF20Q3BBV1 942 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 ZNF568Q3ZCX4 644 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 RHBDF2Q6PJF5 856 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 BZW1Q7L1Q6 419 aaKnown RBP6.52□□□□□ -1.37
HERC4-209ENST00000473533 PCGF5Q86SE9 256 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 LRRC8CQ8TDW0 803 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 EPS8L1Q8TE68 723 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 SHC3Q92529 594 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 ALKBH8Q96BT7 664 aaKnown RBP6.52□□□□□ -1.37
HERC4-209ENST00000473533 SH3GL3Q99963 347 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 FETUBQ9UGM5 382 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 SLC24A2Q9UI40 661 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 PTPN22Q9Y2R2 807 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 NR2E1Q9Y466 385 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 ZHX2Q9Y6X8 837 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 LRRD1A4D1F6 860 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 DIAPH2O60879 1101 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 ACSL3O95573 720 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 P4HBP07237 508 aaKnown RBP6.52□□□□□ -1.37
HERC4-209ENST00000473533 MKRN4PQ13434 485 aaPredicted RBP6.52□□□□□ -1.37
HERC4-209ENST00000473533 BLMHQ13867 455 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 LONRF1Q17RB8 773 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 ABCB5Q2M3G0 1257 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 SPRED3Q2MJR0 410 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 TTC27Q6P3X3 843 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 RHOT1Q8IXI2 618 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 OLIG1Q8TAK6 271 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 LMO3Q8TAP4 145 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 MGARPQ8TDB4 240 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 KRT35Q92764 455 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 RBM41Q96IZ5 413 aaKnown RBP6.52□□□□□ -1.37
HERC4-209ENST00000473533 VCPIP1Q96JH7 1222 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 ZNF577Q9BSK1 485 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 STRA6Q9BX79 667 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 FRMD8P1Q9BZ68 369 aaPredicted RBP6.52□□□□□ -1.37
HERC4-209ENST00000473533 ETNK1Q9HBU6 452 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 TMEM8AQ9HCN3 771 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 STOML1Q9UBI4 398 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 LRRC37AA6NMS7 1700 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 COL2A1P02458 1487 aaPredicted RBP6.52□□□□□ -1.37
HERC4-209ENST00000473533 RASA4BC9J798 803 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 F5H6K3 240 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 RASA4O43374 803 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 NEFHP12036 1026 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 PLS3P13797 630 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 TSHRP16473 764 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 CALB2P22676 271 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 GPC3P51654 580 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 ITGA8P53708 1063 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 CEP55Q53EZ4 464 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 HHATQ5VTY9 493 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 PRR5LQ6MZQ0 368 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 VSTM1Q6UX27 236 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 FAM160B2Q86V87 743 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 PROCA1Q8NCQ7 364 aaPredicted RBP6.52□□□□□ -1.37
HERC4-209ENST00000473533 MICAL1Q8TDZ2 1067 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 IDI2Q9BXS1 227 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 DCLK3Q9C098 648 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 RNPEPL1Q9HAU8 725 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 KIAA1586Q9HCI6 787 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 NOCTQ9UK39 431 aaKnown RBP6.52□□□□□ -1.37
HERC4-209ENST00000473533 STK38LQ9Y2H1 464 aa6.52□□□□□ -1.37
HERC4-209ENST00000473533 IGLV3-22A0A075B6J6 115 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 PPEF1O14829 653 aaPredicted RBP6.51□□□□□ -1.37
HERC4-209ENST00000473533 LYPLA2O95372 231 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 STAT2P52630 851 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 GCNT1Q02742 428 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 ANKRD20A2Q5SQ80 823 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 ANKRD20A1Q5TYW2 823 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 ANKRD20A3Q5VUR7 823 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 CDC42EP5Q6NZY7 148 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 PADI6Q6TGC4 694 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 MIER3Q7Z3K6 550 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 PPM1KQ8N3J5 372 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 ZCCHC9Q8N567 271 aaKnown RBP6.51□□□□□ -1.37
HERC4-209ENST00000473533 PIGOQ8TEQ8 1089 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 SPDL1Q96EA4 605 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 THOC1Q96FV9 657 aaKnown RBP6.51□□□□□ -1.37
HERC4-209ENST00000473533 NAF1Q96HR8 494 aaKnown RBP6.51□□□□□ -1.37
HERC4-209ENST00000473533 ZDHHC15Q96MV8 337 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 SLC5A4Q9NY91 659 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 TAS2R14Q9NYV8 317 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 NINJ2Q9NZG7 142 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 HSPBP1Q9NZL4 362 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 RGL1Q9NZL6 768 aa6.51□□□□□ -1.37
HERC4-209ENST00000473533 COQ4Q9Y3A0 265 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms