RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 CHKBQ9Y259 395 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 WDR64B1ANS9 1081 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 SEMA3EO15041 775 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 TLR3O15455 904 aaKnown RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 SLC1A1P43005 524 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 PURAQ00577 322 aaKnown RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 OCLNQ16625 522 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 AASDHQ4L235 1098 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF530Q6P9A1 599 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 KCNK18Q7Z418 384 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 LRRC17Q8N6Y2 441 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 FAF2Q96CS3 445 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 EMILIN2Q9BXX0 1053 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 TBC1D7Q9P0N9 293 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 KLHL3Q9UH77 587 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 SLC12A6Q9UHW9 1150 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 NUP50Q9UKX7 468 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 SSH2Q76I76 1423 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 PI4K2BG5E9Z4 385 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 INO80B-WBP1J3KQ70 363 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 LGR5O75473 907 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 MYCLP12524 364 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 COX10Q12887 443 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 CSTF3Q12996 717 aaKnown RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 DHX34Q14147 1143 aaKnown RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 LBRQ14739 615 aaKnown RBP9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ACAP1Q15027 740 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 LLGL1Q15334 1064 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 NEDD8Q15843 81 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 EFHC1Q5JVL4 640 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 MZT2BQ6NZ67 158 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 IFNEQ86WN2 208 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 TRPC4APQ8TEL6 797 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 UQCC2Q9BRT2 126 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 CYTH4Q9UIA0 394 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 PCDHGA10Q9Y5H3 936 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 PMF1-BGLAPU3KQ54 211 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 AOX1Q06278 1338 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 FHOD3Q2V2M9 1422 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 PLCG1P19174 1290 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 PGDP52209 483 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 SPIDRQ14159 915 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ARL13BQ3SXY8 428 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 PGBD2Q6P3X8 592 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ZBTB49Q6ZSB9 765 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 OR2W6PQ8NHA6 318 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 APPBP2Q92624 585 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 RFT1Q96AA3 541 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 DMTF1Q9Y222 760 aa9.45□□□□□ -0.9
COL6A3-210ENST00000473258 ARHGEF33A8MVX0 844 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ADSLP30566 484 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 HOXA7P31268 230 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 TXKP42681 527 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PHC1P78364 1004 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ELOA2Q8IYF1 753 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 SAMD3Q8N6K7 520 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PCYOX1LQ8NBM8 494 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 CLHC1Q8NHS4 586 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 GDPD5Q8WTR4 605 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 S100PBPQ96BU1 408 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 MYD88Q99836 296 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 MRPL9Q9BYD2 267 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 WDR12Q9GZL7 423 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 RNF38Q9H0F5 515 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PREBQ9HCU5 417 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 SLC39A2Q9NP94 309 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 SNX12Q9UMY4 172 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ABCG2Q9UNQ0 655 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 RNF113AO15541 343 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 STARP49675 285 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ALKBH5Q6P6C2 394 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 RASGRP2Q7LDG7 609 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 RIN3Q8TB24 985 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PRCCQ92733 491 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 HDHD2Q9H0R4 259 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PICK1Q9NRD5 415 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 FKBP14Q9NWM8 211 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ERBB3P21860 1342 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 TMCC2O75069 709 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PRKCBP05771 671 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PABPC1P11940 636 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 CYP11B2P19099 503 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 TCN1P20061 433 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ZNF57Q68EA5 555 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 DUS1LQ6P1R4 473 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 CLEC17AQ6ZS10 378 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ANKLE2Q86XL3 938 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PHC2Q8IXK0 858 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PPHLN1Q8NEY8 458 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 MAF1Q9H063 256 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ALG13Q9NP73 1137 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 TRIM10Q9UDY6 481 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 RGS17Q9UGC6 210 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 SNX13Q9Y5W8 968 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ZC3H11AO75152 810 aaKnown RBP eCLIP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 GCNT3O95395 438 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 UQCRFS1P1P0C7P4 283 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 PSMB9P28065 219 aa9.44□□□□□ -0.9
COL6A3-210ENST00000473258 ABCE1P61221 599 aaKnown RBP9.44□□□□□ -0.9
COL6A3-210ENST00000473258 NR5A1Q13285 461 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms