RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 KRT6CP48668 564 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 AARS2Q5JTZ9 985 aaKnown RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 SUGP1Q8IWZ8 645 aaKnown RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 VPS50Q96JG6 964 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 SUGCTQ9HAC7 445 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 DLGAP2Q9P1A6 1054 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 PLEKHG3A1L390 1219 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 PRLRP16471 622 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 IRAK1P51617 712 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 TSGA10IPQ3SY00 556 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 STK33Q9BYT3 514 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 NOD2Q9HC29 1040 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 SYTL2Q9HCH5 934 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 FIS1Q9Y3D6 152 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 SLCO1B7G3V0H7 640 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 FBXW4P57775 412 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 ZNF699Q32M78 642 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 CYB5D1Q6P9G0 228 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 ZNF677Q86XU0 584 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 HEXIM2Q96MH2 286 aaKnown RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 ENO4A6NNW6 628 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 TALDO1P37837 337 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 ANXA11P50995 505 aaKnown RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 CENPCQ03188 943 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 KRT33BQ14525 404 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 SPOUT1Q5T280 376 aaKnown RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 RHPN2Q8IUC4 686 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 CCNJLQ8IV13 435 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 THEM5Q8N1Q8 247 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 RNF217Q8TC41 542 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 ARHGEF26Q96DR7 871 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 TMEM51Q9NW97 253 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 HPS5Q9UPZ3 1129 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 SLC4A1P02730 911 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 CHN1P15882 459 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 TRIP4Q15650 581 aaPredicted RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 NLRP9Q7RTR0 991 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 AFDNP55196 1824 aaKnown RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 BICRAQ9NZM4 1560 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 TRIM49P0CI25 452 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 TRIM49CP0CI26 452 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 PRAMEP78395 509 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 PTPROQ16827 1216 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 FAM47AQ5JRC9 791 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 CLMNQ96JQ2 1002 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 ISCUQ9H1K1 167 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 KLHL31Q9H511 634 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 MAD2L2Q9UI95 211 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 RECQLP46063 649 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 VCPP55072 806 aaKnown RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 BCAR1P56945 870 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 C1DQ13901 141 aaKnown RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 IZUMO3Q5VZ72 239 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 FAM45BPQ6NSW5 357 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 NFRKBQ6P4R8 1299 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 ZNF594Q96JF6 807 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 TRAPPC9Q96Q05 1148 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 INO80B-WBP1J3KQ70 363 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 TM9SF1O15321 606 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 KRT6AP02538 564 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 NPEPPSP55786 919 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 ZNF200P98182 395 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 COQ7Q99807 217 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 CLEC4MQ9H2X3 399 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 RIC8BQ9NVN3 520 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 CLPTM1O96005 669 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 FNTAP49354 379 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 SERPINH1P50454 418 aaKnown RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 HSD17B4P51659 736 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 CDC42EP1Q00587 391 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 EFHC2Q5JST6 749 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 PRMT9Q6P2P2 845 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 PPM1NQ8N819 430 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 MAGEB18Q96M61 343 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 XPO6Q96QU8 1125 aaKnown RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 VPS11Q9H270 941 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 CYP4F11Q9HBI6 524 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 TFCP2L1Q9NZI6 479 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 ZNF219Q9P2Y4 722 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 AKT3Q9Y243 479 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 TKTP29401 623 aaKnown RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 ADCY1Q08828 1119 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 BFSP2Q13515 415 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 TSTA3Q13630 321 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 TRIP10Q15642 601 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 ANO4Q32M45 955 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 PLEKHA5Q9HAU0 1116 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 TBX22Q9Y458 520 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 CENPXA8MT69 81 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 TNFAIP8O95379 198 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 MYL2P10916 166 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 CCNI2Q6ZMN8 369 aaPredicted RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 P3H2Q8IVL5 708 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 PPHLN1Q8NEY8 458 aaKnown RBP13.98□□□□□ -0.17
COL6A3-209ENST00000472056 NPHS2Q9NP85 383 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 IMPAD1Q9NX62 359 aa13.98□□□□□ -0.17
COL6A3-209ENST00000472056 hCG_1642624A0A1W2PR95 340 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 C5orf58C9J3I9 102 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 GNAT1P11488 350 aa13.97□□□□□ -0.17
COL6A3-209ENST00000472056 VCAM1P19320 739 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms