RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 USP10Q14694 798 aaKnown RBP5.37□□□□□ -1.55
VPS13A-210ENST00000471439 CDSNQ15517 529 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 CT47A1Q5JQC4 288 aaPredicted RBP5.37□□□□□ -1.55
VPS13A-210ENST00000471439 ZNF585AQ6P3V2 769 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 DDX42Q86XP3 938 aaKnown RBP eCLIP5.37□□□□□ -1.55
VPS13A-210ENST00000471439 USP38Q8NB14 1042 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 CHST14Q8NCH0 376 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 WWC2-AS2Q96NR7 200 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 CD248Q9HCU0 757 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 CNOT11Q9UKZ1 510 aaKnown RBP5.37□□□□□ -1.55
VPS13A-210ENST00000471439 NOP58Q9Y2X3 529 aaKnown RBP5.37□□□□□ -1.55
VPS13A-210ENST00000471439 SLC4A7Q9Y6M7 1214 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 NUP155O75694 1391 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 FAM208BQ5VWN6 2430 aa5.37□□□□□ -1.55
VPS13A-210ENST00000471439 MAP1BP46821 2468 aaKnown RBP5.36□□□□□ -1.55
VPS13A-210ENST00000471439 PTPDC1A2A3K4 754 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 H0YIN7 160 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 MATN2O00339 956 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 NEMP1O14524 444 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 ATP2A2P16615 1042 aaKnown RBP5.36□□□□□ -1.55
VPS13A-210ENST00000471439 ADCYAP1R1P41586 468 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 STAT5BP51692 787 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 STILQ15468 1287 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 SURF1Q15526 300 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 SLFN13Q68D06 897 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 UBE2Q1Q7Z7E8 422 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 RTN4RL1Q86UN2 441 aaPredicted RBP5.36□□□□□ -1.55
VPS13A-210ENST00000471439 CIR1Q86X95 450 aaPredicted RBP5.36□□□□□ -1.55
VPS13A-210ENST00000471439 REXO1L1PQ8IX06 675 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 PALM2Q8IXS6 379 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 AHI1Q8N157 1196 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 PRPF38AQ8NAV1 312 aaKnown RBP5.36□□□□□ -1.55
VPS13A-210ENST00000471439 FOXRED1Q96CU9 486 aaPredicted RBP5.36□□□□□ -1.55
VPS13A-210ENST00000471439 SAMD11Q96NU1 681 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 ORAI3Q9BRQ5 295 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 BRINP2Q9C0B6 783 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 OR10A5Q9H207 317 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 B4GALT6Q9UBX8 382 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 SRP68Q9UHB9 627 aaKnown RBP5.36□□□□□ -1.55
VPS13A-210ENST00000471439 MAGEL2Q9UJ55 1249 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 RALYQ9UKM9 306 aaKnown RBP5.36□□□□□ -1.55
VPS13A-210ENST00000471439 ATP8A1Q9Y2Q0 1164 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 SMG6Q86US8 1419 aaKnown RBP5.36□□□□□ -1.55
VPS13A-210ENST00000471439 NRXN2Q9P2S2 1712 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 MYH14Q7Z406 1995 aaKnown RBP5.36□□□□□ -1.55
VPS13A-210ENST00000471439 NCOR2Q9Y618 2525 aa5.36□□□□□ -1.55
VPS13A-210ENST00000471439 GCN1Q92616 2671 aaKnown RBP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 USP9XQ93008 2570 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 PPM1GO15355 546 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 FOXS1O43638 330 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 HIP1RO75146 1068 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 F2P00734 622 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 HMGCRP04035 888 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 PTX3P26022 381 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 TM4SF1P30408 202 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 SDHAP31040 664 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 ETV4P43268 484 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 PUM1Q14671 1186 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 DHCR24Q15392 516 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 DBX2Q6ZNG2 339 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 DDX46Q7L014 1031 aaKnown RBP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 OTOP2Q7RTS6 562 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 DNERQ8NFT8 737 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 ZCRB1Q8TBF4 217 aaKnown RBP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 CHTF18Q8WVB6 975 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 STAG1Q8WVM7 1258 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 ZNF622Q969S3 477 aaKnown RBP eCLIP5.35□□□□□ -1.552e-7■□□□□ 9.4
VPS13A-210ENST00000471439 NEIL1Q96FI4 390 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 ASB2Q96Q27 587 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 LMF1Q96S06 567 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 DPYSL5Q9BPU6 564 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 BOCQ9BWV1 1114 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 BTBD2Q9BX70 525 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 CARD11Q9BXL7 1154 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 ZDHHC5Q9C0B5 715 aa5.35□□□□□ -1.55
VPS13A-210ENST00000471439 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 GBA2Q9HCG7 927 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 ZNF277Q9NRM2 450 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 THG1LQ9NWX6 298 aaKnown RBP5.35□□□□□ -1.55
VPS13A-210ENST00000471439 ANKRD31Q8N7Z5 1873 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 COL11A2P13942 1736 aaPredicted RBP5.34□□□□□ -1.55
VPS13A-210ENST00000471439 ANKRD26Q9UPS8 1709 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 SMIM22K7EJ46 135 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 NPTXRO95502 500 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 FOSL2P15408 326 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 BPIP17213 487 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 CDK11BP21127 795 aaKnown RBP5.34□□□□□ -1.55
VPS13A-210ENST00000471439 RGS3P49796 1198 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 KIF11P52732 1056 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 IGBP1P78318 339 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 MOGSQ13724 837 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 FAM50AQ14320 339 aaKnown RBP5.34□□□□□ -1.55
VPS13A-210ENST00000471439 STAT4Q14765 748 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 TCTN3Q6NUS6 607 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 RASAL3Q86YV0 1011 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 IFNL2Q8IZJ0 200 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 BCL6BQ8N143 479 aaPredicted RBP5.34□□□□□ -1.55
VPS13A-210ENST00000471439 CHST13Q8NET6 341 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 OR2W6PQ8NHA6 318 aa5.34□□□□□ -1.55
VPS13A-210ENST00000471439 ATXN2LQ8WWM7 1075 aaKnown RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms