RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 WDR60Q8WVS4 1066 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 NCLNQ969V3 563 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 GTPBP3Q969Y2 492 aaKnown RBP5.49□□□□□ -1.53
COL3A1-205ENST00000470167 KIFC2Q96AC6 838 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 HDAC11Q96DB2 347 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 TMA16Q96EY4 203 aaKnown RBP5.49□□□□□ -1.53
COL3A1-205ENST00000470167 TRIM47Q96LD4 638 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 PNMA5Q96PV4 448 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 FERD3LQ96RJ6 166 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 TTC1Q99614 292 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 SLC30A3Q99726 388 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 COQ7Q99807 217 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 HAUS8Q9BT25 410 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 FUT8Q9BYC5 575 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 BCO2Q9BYV7 579 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 NUF2Q9BZD4 464 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 SHCBP1LQ9BZQ2 653 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 CDH19Q9H159 772 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 RAD21L1Q9H4I0 556 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 DENND2DQ9H6A0 471 aaPredicted RBP5.49□□□□□ -1.53
COL3A1-205ENST00000470167 VCX3AQ9NNX9 186 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 C11orf16Q9NQ32 467 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 IARS2Q9NSE4 1012 aaKnown RBP5.49□□□□□ -1.53
COL3A1-205ENST00000470167 THAP1Q9NVV9 213 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 MARK1Q9P0L2 795 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 FNIP2Q9P278 1114 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 REV1Q9UBZ9 1251 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 GTF2IRD1Q9UHL9 959 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 ZNF180Q9UJW8 692 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 GGA2Q9UJY4 613 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 PTBP2Q9UKA9 531 aaKnown RBP5.49□□□□□ -1.53
COL3A1-205ENST00000470167 ZNF215Q9UL58 517 aaPredicted RBP5.49□□□□□ -1.53
COL3A1-205ENST00000470167 MED16Q9Y2X0 877 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.49□□□□□ -1.53
COL3A1-205ENST00000470167 NUMBLQ9Y6R0 609 aa5.49□□□□□ -1.53
COL3A1-205ENST00000470167 ZNF644Q9H582 1327 aaPredicted RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 SCAF11Q99590 1463 aaKnown RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 C1orf232A0A0U1RR37 186 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 KANSL1LA0AUZ9 987 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 PHF20L1A8MW92 1017 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 FADS2P1A8MWK0 482 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 H3BQV1 296 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 GOLGA8RI6L899 631 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 UBXN8O00124 270 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 SPOPO43791 374 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 SHOX2O60902 331 aaPredicted RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 NBNO60934 754 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 GLRX3O76003 335 aaKnown RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 ALDH1A2O94788 518 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 DDX58O95786 925 aaKnown RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 CD4P01730 458 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 ATP5BP06576 529 aaKnown RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 USP17L7P0C7H9 530 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 CALM1P0DP23 149 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 CALM2P0DP24 149 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 CALM3P0DP25 149 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 CKBP12277 381 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 SNRPBP14678 240 aaKnown RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 EIF2S2P20042 333 aaKnown RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 SERPINB3P29508 390 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 HMOX2P30519 316 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 KRT20P35900 424 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 HSPA13P48723 471 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 VPS41P49754 854 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 CLCN4P51793 760 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 EIF4A1P60842 406 aaKnown RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 PRKCEQ02156 737 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 ZBTB16Q05516 673 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 SMARCB1Q12824 385 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 SGCGQ13326 291 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 GRM2Q14416 872 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 NR1D2Q14995 579 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 EPHA7Q15375 998 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 CCNG2Q16589 344 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 CYP27C1Q4G0S4 372 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 ARSHQ5FYA8 562 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 GRTP1Q5TC63 336 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 MEI1Q5TIA1 1274 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 LIN54Q6MZP7 749 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 KLC3Q6P597 504 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 SLC30A10Q6XR72 485 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 SPOCD1Q6ZMY3 1216 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 CCDC149Q6ZUS6 474 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 MAMDC2Q7Z304 686 aaPredicted RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 LIMS2Q7Z4I7 341 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 JAMLQ86YT9 394 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 CD302Q8IX05 232 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 OR13H1Q8NG92 308 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 OR7G1Q8NGA0 311 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 RNF34Q969K3 372 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 ATP6V1G3Q96LB4 118 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 NLRP4Q96MN2 994 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 MNTQ99583 582 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 DESI2Q9BSY9 194 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 IFT22Q9H7X7 185 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 HPS4Q9NQG7 708 aa5.48□□□□□ -1.53
COL3A1-205ENST00000470167 PIH1D3Q9NQM4 214 aaKnown RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 METTL5Q9NRN9 209 aaKnown RBP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.48□□□□□ -1.53
COL3A1-205ENST00000470167 EURLQ9NYK6 297 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms