RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 PDLIM7Q9NR12 457 aa10.3□□□□□ -0.76
HDAC3-205ENST00000469550 STX8Q9UNK0 236 aa10.3□□□□□ -0.76
HDAC3-205ENST00000469550 TRAF3IP3Q9Y228 551 aa10.3□□□□□ -0.76
HDAC3-205ENST00000469550 DAAM1Q9Y4D1 1078 aa10.3□□□□□ -0.76
HDAC3-205ENST00000469550 NCANO14594 1321 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 GOLGA6L10A0A0M3HER8 536 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 GTPBP10A4D1E9 387 aaKnown RBP10.29□□□□□ -0.76
HDAC3-205ENST00000469550 LIN7AO14910 233 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-205ENST00000469550 RGS16O15492 202 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-205ENST00000469550 TDP2O95551 362 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 FGGP02679 453 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 ZNF865P0CJ78 1059 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-205ENST00000469550 GOLGA8HP0CJ92 632 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 FERP16591 822 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 CCND1P24385 295 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 PON1P27169 355 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 PDE6CP51160 858 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 DR1Q01658 176 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 GRIK3Q13003 919 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 NAA25Q14CX7 972 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 EXOC3L4Q17RC7 722 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 TRIM60Q495X7 471 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 GALNTL6Q49A17 601 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 ACCSLQ4AC99 568 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 LRCH2Q5VUJ6 765 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 PPP1R18Q6NYC8 613 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 ZNF467Q7Z7K2 595 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-205ENST00000469550 DAAM2Q86T65 1068 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 LRRC34Q8IZ02 419 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 NSMCE1Q8WV22 266 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 FAM212AQ96EL1 285 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 ANKRD27Q96NW4 1050 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 PLCD4Q9BRC7 762 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 CELF4Q9BZC1 486 aaKnown RBP10.29□□□□□ -0.76
HDAC3-205ENST00000469550 DPH5Q9H2P9 285 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 GOLPH3Q9H4A6 298 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 METTL14Q9HCE5 456 aaKnown RBP10.29□□□□□ -0.76
HDAC3-205ENST00000469550 INTS9Q9NV88 658 aaKnown RBP10.29□□□□□ -0.76
HDAC3-205ENST00000469550 TMEM260Q9NX78 707 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 NOP53Q9NZM5 478 aaKnown RBP10.29□□□□□ -0.76
HDAC3-205ENST00000469550 ARMCX3Q9UH62 379 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-205ENST00000469550 ATP11BQ9Y2G3 1177 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 SYNGAP1Q96PV0 1343 aa10.29□□□□□ -0.76
HDAC3-205ENST00000469550 DNAJC25-GNG10A0A024R161 153 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 DLL1O00548 723 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 DDX3XO00571 662 aaKnown RBP eCLIP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 DDX3YO15523 660 aaKnown RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 NEBLO76041 1014 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 ANP32DO95626 131 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 OAS1P00973 400 aaKnown RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 TMEM253P0C7T8 217 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 RARBP10826 455 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 NQO1P15559 274 aaKnown RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 SLC9A1P19634 815 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 ADCYAP1R1P41586 468 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 ADCY7P51828 1080 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 ENOX2Q16206 610 aaKnown RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 ECM1Q16610 540 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 PRAMEF19Q5SWL8 479 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 MAMDC4Q6UXC1 1216 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 SLC30A5Q8TAD4 765 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 MKL1Q969V6 931 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 STAMBPL1Q96FJ0 436 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 PIGSQ96S52 555 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 NAP1L4Q99733 375 aaKnown RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 TSEN34Q9BSV6 310 aaKnown RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 TEX13BQ9BXU2 312 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 XPNPEP3Q9NQH7 507 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 PARP2Q9UGN5 583 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 RASAL2Q9UJF2 1139 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 KIAA0391O15091 583 aaKnown RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 SNX3O60493 162 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 ADAMTS4O75173 837 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 NDUFB10O96000 172 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 MYCNP04198 464 aaPredicted RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 SHBGP04278 402 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 RPSAP08865 295 aaKnown RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 CLTAP09496 248 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 ACTN1P12814 892 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 AKR1A1P14550 325 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 CCNG1P51959 295 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 EPHA7Q15375 998 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 C11orf91Q3C1V1 193 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 HERC4Q5GLZ8 1057 aaPredicted RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 MFSD5Q6N075 450 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 TAOK1Q7L7X3 1001 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 RNF180Q86T96 592 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 NELFCDQ8IXH7 590 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 TCP11Q8WWU5 503 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 RFFLQ8WZ73 363 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 RNF25Q96BH1 459 aaPredicted RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 GUCD1Q96NT3 240 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 ELAC2Q9BQ52 826 aaKnown RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 SELENOSQ9BQE4 189 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 FGFBP2Q9BYJ0 223 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 ROPN1BQ9BZX4 212 aaPredicted RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 ROPN1Q9HAT0 212 aaPredicted RBP10.28□□□□□ -0.76
HDAC3-205ENST00000469550 LRRC4CQ9HCJ2 640 aa10.28□□□□□ -0.76
HDAC3-205ENST00000469550 LRRC37A2A6NM11 1700 aa10.27□□□□□ -0.76
HDAC3-205ENST00000469550 SPDYE3A6NKU9 549 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms