RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	SH3BP5L	Q7L8J4	393 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	SMC1B	Q8NDV3	1235 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	MED15	Q96RN5	788 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	GML	Q99445	158 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	HSD17B14	Q9BPX1	270 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	NT5C1A	Q9BXI3	368 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	ASB7	Q9H672	318 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	UBN1	Q9NPG3	1134 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	MRFAP1	Q9Y605	127 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	CYP26A1	O43174	497 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	ADORA2A	P29274	412 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	NAA35	Q5VZE5	725 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	C7orf43	Q8WVR3	580 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	MTG1	Q9BT17	334 aa	Predicted RBP	12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	AGPAT5	Q9NUQ2	364 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004	GTF3C4	Q9UKN8	822 aa		12.52	□□□□□ -0.4
RBM39-223	ENST00000463004		A0A0A6YYK5	440 aa	Predicted RBP	12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	IRF6	O14896	467 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	ADCY3	O60266	1144 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	MSC	O60682	206 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	KRT10	P13645	584 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	SLC9A1	P19634	815 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	ZBTB16	Q05516	673 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	CEP85L	Q5SZL2	805 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	KAZN	Q674X7	775 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	CASC4	Q6P4E1	433 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	TADA2B	Q86TJ2	420 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	FBXO16	Q8IX29	292 aa	Predicted RBP	12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	CALN1	Q9BXU9	219 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	COL1A1	P02452	1464 aa	Predicted RBP	12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	RSPH10B2	B2RC85	870 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	RSPH10B	P0C881	870 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	PRLR	P16471	622 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	KLRC1	P26715	233 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	PON1	P27169	355 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	RAB27A	P51159	221 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	NLRP11	P59045	1033 aa	Known RBP	12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	CYP24A1	Q07973	514 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	MAPK8IP2	Q13387	824 aa	Predicted RBP	12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	NFIL3	Q16649	462 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	GLB1L	Q6UWU2	654 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	ABRA	Q8N0Z2	381 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	TBC1D31	Q96DN5	1066 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	FOXP3	Q9BZS1	431 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	TRPV6	Q9H1D0	765 aa		12.52	□□□□□ -0.41
RBM39-223	ENST00000463004	SMAP	O00193	183 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	CLK2	P49760	499 aa	Known RBP	12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	GALC	P54803	685 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	CELF3	Q5SZQ8	465 aa	Known RBP	12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	WNK4	Q96J92	1243 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	FMO2	Q99518	471 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	CHP1	Q99653	195 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	KCNF1	Q9H3M0	494 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	CPSF3	Q9UKF6	684 aa	Known RBP	12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	SMIM22	K7EJ46	135 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	ACKR2	O00590	384 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	PGK2	P07205	417 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	OAS2	P29728	719 aa	Known RBP	12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	SLC12A2	P55011	1212 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	SH3D19	Q5HYK7	790 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	RCOR2	Q8IZ40	523 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	PARD6B	Q9BYG5	372 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	TAF1D	Q9H5J8	278 aa	Predicted RBP	12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	FBXL5	Q9UKA1	691 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	PCDHAC2	Q9Y5I4	1007 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	ZNF541	Q9H0D2	1346 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	ICAM3	P32942	547 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	GUCY2F	P51841	1108 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	CUL2	Q13617	745 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	TMEM132B	Q14DG7	1078 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	UAP1	Q16222	522 aa	Predicted RBP	12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	DARS2	Q6PI48	645 aa	Known RBP	12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	C12orf56	Q8IXR9	622 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	EFCAB13	Q8IY85	973 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	12.51	□□□□□ -0.41	3e-8	■■■□□ 14.9
RBM39-223	ENST00000463004	MBOAT7	Q96N66	472 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	TTC25	Q96NG3	672 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	NGRN	Q9NPE2	291 aa	Known RBP	12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	UBR2	Q8IWV8	1755 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	COL1A2	P08123	1366 aa		12.51	□□□□□ -0.41
RBM39-223	ENST00000463004	LSM8	O95777	96 aa	Known RBP	12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	ZBED1	O96006	694 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	NFKBIA	P25963	317 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	BFSP2	Q13515	415 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	DNAJC21	Q5F1R6	531 aa	Known RBP	12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	ARHGEF18	Q6ZSZ5	1173 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	LRRC71	Q8N4P6	559 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	PORCN	Q9H237	461 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	AIPL1	Q9NZN9	384 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	SLC45A1	Q9Y2W3	748 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	EML1	O00423	815 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	TAF6	P49848	677 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	GTF2B	Q00403	316 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	ENPEP	Q07075	957 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	ACVR2B	Q13705	512 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	RAD9B	Q6WBX8	426 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	TRIM42	Q8IWZ5	723 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	PDIK1L	Q8N165	341 aa		12.5	□□□□□ -0.41
RBM39-223	ENST00000463004	CYP2W1	Q8TAV3	490 aa		12.5	□□□□□ -0.41

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