RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	FSHR	P23945	695 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	ID4	P47928	161 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	ANAPC15	P60006	121 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	GPC5	P78333	572 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	NCBP1	Q09161	790 aa	Known RBP	12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	PSMD5	Q16401	504 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	EEF1DP3	Q658K8	133 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	DIS3L2	Q8IYB7	885 aa	Known RBP	12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	WASF1	Q92558	559 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	TTPAL	Q9BTX7	342 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	SNTG2	Q9NY99	539 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	PARP2	Q9UGN5	583 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	CDH7	Q9ULB5	785 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	LRRIQ4	A6NIV6	560 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	TMEM189-UBE2V1	I3L0A0	370 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	LMNA	P02545	664 aa	Known RBP	12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	C8A	P07357	584 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	FGFR3	P22607	806 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	FAM171A1	Q5VUB5	890 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	DCLRE1A	Q6PJP8	1040 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	MAEA	Q7L5Y9	396 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	C3orf58	Q8NDZ4	430 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	MCPH1	Q8NEM0	835 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	ITFG1	Q8TB96	612 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	FGF13	Q92913	245 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	PPP1R10	Q96QC0	940 aa	Known RBP	12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	POLR3C	Q9BUI4	534 aa	Predicted RBP	12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	SEMA4A	Q9H3S1	761 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	PIDD1	Q9HB75	910 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	TUFT1	Q9NNX1	390 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	PPP4R2	Q9NY27	417 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	MTRR	Q9UBK8	725 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	SIT1	Q9Y3P8	196 aa		12.34	□□□□□ -0.43
PTPN7-204	ENST00000462815	ACKR2	O00590	384 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	N4BP3	O15049	544 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	TH	P07101	528 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	CYP11B2	P19099	503 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	RBM25	P49756	843 aa	Known RBP	12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	RAB33A	Q14088	237 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	ECM1	Q16610	540 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	SPECC1	Q5M775	1068 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	NT5DC1	Q5TFE4	455 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	NOSTRIN	Q8IVI9	506 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	C1orf210	Q8IVY1	113 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	NPAS3	Q8IXF0	933 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	SUMF1	Q8NBK3	374 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	KCNG4	Q8TDN1	519 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	RMDN1	Q96DB5	314 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	HCFC1R1	Q9NWW0	138 aa		12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	DNMT3B	Q9UBC3	853 aa	Known RBP	12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	MTF2	Q9Y483	593 aa	Predicted RBP	12.33	□□□□□ -0.44
PTPN7-204	ENST00000462815	ZFHX4	Q86UP3	3567 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	GPR179	Q6PRD1	2367 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	NRG2	O14511	850 aa	Predicted RBP	12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	CCL16	O15467	120 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	MEFV	O15553	781 aa	Predicted RBP	12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	PRKCB	P05771	671 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	ATP2B1	P20020	1258 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	RPA1	P27694	616 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	NAMPT	P43490	491 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	PRPF4B	Q13523	1007 aa	Known RBP	12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	ANKRD1	Q15327	319 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	UPP1	Q16831	310 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	SLC5A9	Q2M3M2	681 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	XKR4	Q5GH76	650 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	ZBTB8OS	Q8IWT0	167 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	SLC7A14	Q8TBB6	771 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	KIFC3	Q9BVG8	833 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	C2orf40	Q9H1Z8	148 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	BRMS1	Q9HCU9	246 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	MIA3	Q5JRA6	1907 aa		12.32	□□□□□ -0.44
PTPN7-204	ENST00000462815	KANSL1L	A0AUZ9	987 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	TBC1D4	O60343	1298 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	RFX1	P22670	979 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	CLCNKB	P51801	687 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	SOX4	Q06945	474 aa	Predicted RBP	12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	ELAVL2	Q12926	359 aa	Known RBP	12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	FZD5	Q13467	585 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	SNW1	Q13573	536 aa	Known RBP	12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	MLF2	Q15773	248 aa	Predicted RBP	12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	MAPK6	Q16659	721 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	PPM1L	Q5SGD2	360 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	AXDND1	Q5T1B0	1012 aa	Predicted RBP	12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	LIN9	Q5TKA1	542 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	PADI6	Q6TGC4	694 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	ALKAL1	Q6UXT8	129 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	CEP57	Q86XR8	500 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	ZNF687	Q8N1G0	1237 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	C4orf32	Q8N8J7	132 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	NELL1	Q92832	810 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	DDX27	Q96GQ7	796 aa	Known RBP	12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	NACC1	Q96RE7	527 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	GOLGA2P5	Q9HBQ8	144 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	PTPRH	Q9HD43	1115 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	AVEN	Q9NQS1	362 aa	Predicted RBP	12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	KCNH3	Q9ULD8	1083 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	BACE2	Q9Y5Z0	518 aa		12.31	□□□□□ -0.44
PTPN7-204	ENST00000462815	CACNA1I	Q9P0X4	2223 aa		12.31	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms