RNA–Protein interactions for RNA: ENST00000460112.3

SHROOM4-203, Transcript of shroom family member 4, humanhuman

TSL 5 BASIC

Gene SHROOM4, Length 8,919 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4-203ENST00000460112 CCDC88AQ3V6T2 1871 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 MAFGO15525 162 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 RXRBP28702 533 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 ADD1P35611 737 aaKnown RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 ZNF544Q6NX49 715 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 DDX53Q86TM3 631 aaKnown RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 LINC00301Q8NCQ3 95 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 CYTH2Q99418 400 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 MMP19Q99542 508 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 SMYD3Q9H7B4 428 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 C10orf88Q9H8K7 445 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 CLRN2A0PK11 232 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 GMNCA6NCL1 334 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 DFFAO00273 331 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 PSMC1P62191 440 aaKnown RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 CSTF3Q12996 717 aaKnown RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 TMEM270Q6UE05 265 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 TTLL6Q8N841 843 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 ST13P5Q8NFI4 369 aaPredicted RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 FAM20AQ96MK3 541 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 USP44Q9H0E7 712 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 MAN1C1Q9NR34 630 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 CNOT8Q9UFF9 292 aaKnown RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 ZC3H4Q9UPT8 1303 aaKnown RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 M0R3G1 203 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 ATXN8OSP0DMR3 200 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 KPNB1Q14974 876 aaKnown RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 FAM173BQ6P4H8 233 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 RHOT1Q8IXI2 618 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 TSEN34Q9BSV6 310 aaKnown RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 OSBPL1AQ9BXW6 950 aa9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 MRPL1Q9BYD6 325 aaKnown RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 FBXO2Q9UK22 296 aaPredicted RBP9.36□□□□□ -0.91
SHROOM4-203ENST00000460112 GLI2P10070 1586 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 hCG_2014768A0A024R1R8 64 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 MAPRE1Q15691 268 aaKnown RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 TSGA10IPQ3SY00 556 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 C4orf22Q6V702 233 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 COG1Q8WTW3 980 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 CARD14Q9BXL6 1004 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 LGR6Q9HBX8 967 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 SLC9A2Q9UBY0 812 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 DISP1Q96F81 1524 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 KIF28PB7ZC32 967 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 GSPT1P15170 499 aaKnown RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 ADD2P35612 726 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 UBXN2AP68543 259 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 POU5F1BQ06416 359 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 BYSLQ13895 437 aaKnown RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 ZNF564Q8TBZ8 553 aaPredicted RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 MASTLQ96GX5 879 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 LRRC53A6NM62 1247 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 H2AFYO75367 372 aaKnown RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 GNA15P30679 374 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 RGS4P49798 205 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 ARHGEF7Q14155 803 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 ATPAF2Q8N5M1 289 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 FLCNQ8NFG4 579 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 PRPF18Q99633 342 aaKnown RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 FCER1AP12319 257 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 CYTH1Q15438 398 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 USPL1Q5W0Q7 1092 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 ANKS6Q68DC2 871 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 EPC1Q9H2F5 836 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 PARVBQ9HBI1 364 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 ZFATQ9P243 1243 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 ARIH1Q9Y4X5 557 aaPredicted RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 KNL1Q8NG31 2342 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 NLRP1Q9C000 1473 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 MBD5Q9P267 1494 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 UBN2Q6ZU65 1347 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 MARK3P27448 753 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 CDC27P30260 824 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 BCAR1P56945 870 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 GRAPQ13588 217 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 TRIP4Q15650 581 aaPredicted RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 GRAPLQ8TC17 118 aaPredicted RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 POP5Q969H6 163 aaKnown RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 OTULINQ96BN8 352 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 HES6Q96HZ4 224 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 MED15Q96RN5 788 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 HEY1Q9Y5J3 304 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 PI4K2BG5E9Z4 385 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 LZTS3O60299 673 aaPredicted RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 USP17L8P0C7I0 530 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 CPB1P15086 417 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 HIC1Q14526 733 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 NLRP10Q86W26 655 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 PAGE5Q96GU1 130 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 RMDN3Q96TC7 470 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 DNAJC7Q99615 494 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 PRRG3Q9BZD7 231 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 CHMP2BQ9UQN3 213 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 CLTCL1P53675 1640 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 SLC16A3O15427 465 aaKnown RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 TLR2O60603 784 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 RASSF9O75901 435 aa9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 GUCA1AP43080 201 aaPredicted RBP9.35□□□□□ -0.91
SHROOM4-203ENST00000460112 ARFIP2P53365 341 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms